BAC Information

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BAC

Clone NameMSMg01-478J16
Chromosome7 (Build37)
Map Location 122,506,603 - 122,666,841
singlet/doubletdoublet
Overlap geneSox6
Upstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478J16.T7 (MSMg01no478_j16.b1)MSMg01-478J16.TJ (MSMg01no478_j16.g1)
ACCAG559681AG559682
length730735
length of high quality
(start - end)
191 (114 - 304)325 (314 - 638)
definitionCHROMAT_FILE: MSMg01no478_j16.b1 PHD_FILE: MSMg01no478_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:21 2005CHROMAT_FILE: MSMg01no478_j16.g1 PHD_FILE: MSMg01no478_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,666,652 - 122,666,841)(122,506,603 - 122,506,927)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTACGGAGGGGCGGAANCAGCGG
TTTCCAAACACGGGGGGNCNCCNGNCNTTAGGACTAATGGTGCCATATCA
CTTGTTTTATCACAGTCGATGGCATGAATCTAAGCATGTTGTAGGAGATG
CATGGGATGCTGTTGTTGCCAGAACAGTAGAGACAGAACTTTTCAGGCTT
GGTGACCCTTCACATCCTTGGGAAAAGCTTGTCATACTTCATTTGAGAGT
GTCTCTGAAAGCCCCATAAAATGTATCCGCAAGAAGCTGTGCTGACAGGA
GTTTTTGTGCTTTGCACGTGCTGCATGATGCTTCTCTGCTTGCAGGGCTC
AGTACTATTGAGGCAGAGGGAGGCATGACACACTTTCCCTTCCCAAGCAG
CCTATGGTCCAGGGGTTACAAAAACCAACTGAGCACCCCAGGAAATCTGA
ACAGCTCATTTCACCCTTATGACTATGATTCCTCTTTTTGAGTTTGAATC
TTGTGGGTTTTGGCAACCTTTGATGAATCATTGTAAACCTTCCTTCTCTC
TAGGGGGAAATGTTCATCTTTGAGGAATTATTCATAGATAGTTGGTAGTT
AAGTGATAGATTGTAGGTAGGTAGATAGGTAGATGGCTGATTTTTGGTAA
GTAGATGATTGACAGATTTTTGGTTTCTATATTTTATTCACTTCCCCATT
TATACTATTTCTTCCCACGTCCCCTTTTTG
GTGAGGCCAGGNGGACGCCGGTTTCTTACTTGTGGGNGNACNAANGAAGT
AACAGAAGAGAGGCGNCNAACCNGAGNTACTCAGGGGCAAAAGACCATGG
TGCATTCTACCGAAGAAAGACACACTACTTGTCAAGGATAATTTGAAATT
GTTACTATTTTTTCTTAGTTCACACATGGTATTGGCTCCTAGAAAAGGGA
AATGAGTTCCCACCAAGTACCCATGCCCCTCTCTGCTCTTTTGCCTCTCT
TGCAAGCAATTATGAGCAAAAAAAAGACATGCCTGTGTTACCTCAGACTC
AAAGTANTTAAATCATATGTAGCTCCCTCCATCTCTCCCATTTCTGCGGG
CTGAATGAAGACTTTGCATTCCAAACTGGATTTAAAAGATTCTGGGGTAT
TTGTATCGCTTGGGCCTCAGAGTGACTTCATGAAATCAAGTCCCCATGAT
GACTGGTGGTGATATAAAATAAACAAGAAATACACATTTAAGTCATTGAG
CTGCTGACGCTCTGGGATCAATTCATTACTGCAGCAAATGACGGCTAATA
TAGCTACAGCAGTAGAAAAACGTTCTGAAATCAATTGATTCAGCAGATCA
ATAGGTTGAAAAAACAGTAGAGGGTCAAAAGGCTAATGTTTATCTTCAAA
ACTGTCAGTACATGGCAAGTCTTACAAGTGGTCTGTGGGCACCAATCTGT
CACTTCCTAGCATAAAGAGATAAGACAGATACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_j16.b1 MSMg01no478_j16.b1 CHROMAT_FILE:
MSMg01no478_j16.b1 PHD_FILE: MSMg01no478_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:21 2005
         (191 letters)



>mm_chr7_122666452_122667042
          Length = 591

 Score =  313 bits (162), Expect = 3e-90
 Identities = 183/190 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcgatggcatgaatctaagcatgttgtaggagatgcatgggatgctgttgttgccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agtcgatggcatgaatctaagcatgttgtaggagatgcatgggatgctgttgttgccaga 331

                                                                       
Query: 61  acagtagagacagaacttttcaggcttggtgacccttcacatccttgggaaaagcttgtc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 acagtagagacagaacttttcaggcttggtgaccctacacatccttgggaaaagcttgtc 271

                                                                       
Query: 121 atacttcatttgagagtgtctctgaaagccccataaaatgtatccgcaagaagctgtgct 180
           |||| |||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||
Sbjct: 270 atacatcatttgagagtgtctctgaaagccccataaaacatattcgcaagaagttgtgct 211

                     
Query: 181 gacaggagtt 190
           ||||| ||||
Sbjct: 210 gacagtagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no478_j16.g1 MSMg01no478_j16.g1 CHROMAT_FILE:
MSMg01no478_j16.g1 PHD_FILE: MSMg01no478_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:22 2005
         (325 letters)



>mm_chr7_122506403_122507127
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgtagctccctccatctctcccatttctgcgggctgaatgaagactttgcattcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgtagctccctccatctctcccatttctgcgggctgaatgaagactttgcattcca 260

                                                                       
Query: 61  aactggatttaaaagattctggggtatttgtatcgcttgggcctcagagtgacttcatga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aactggatttaaaagattctggggtatttgtatcgcttgggccccagagtgacttcatga 320

                                                                       
Query: 121 aatcaagtccccatgatgactggtggtgatataaaataaacaagaaatacacatttaagt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcaagcccccatgatgactggtggtgatataaaataaacaagaaatacacatttaagt 380

                                                                       
Query: 181 cattgagctgctgacgctctgggatcaattcattactgcagcaaatgacggctaatatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cattgagctgctgacgctctgggatcaattcattactgcagcaaatgacagctaatatag 440

                                                                       
Query: 241 ctacagcagtagaaaaacgttctgaaatcaattgattcagcagatcaataggttgaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ctacagcagtagaaaaacgttctgaaatcaattgattcagcagatcaatagattgaaaaa 500

                                    
Query: 301 acagtagagggtcaaaaggctaatg 325
           |||||||||||||||||||||||||
Sbjct: 501 acagtagagggtcaaaaggctaatg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)