BAC Information

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BAC

Clone NameMSMg01-478K01
Chromosome7 (Build37)
Map Location 119,422,632 - 119,423,105
singlet/doubletsinglet
Overlap geneMical2
Upstream geneLOC384658, Galntl4, LOC668399, LOC100042678, Usp47, Dkk3
Downstream geneMicalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478K01.T7 (MSMg01no478_k01.b1)MSMg01-478K01.TJ (MSMg01no478_k01.g1)
ACCAG559699AG559700
length736732
length of high quality
(start - end)
238 (71 - 308)474 (61 - 534)
definitionCHROMAT_FILE: MSMg01no478_k01.b1 PHD_FILE: MSMg01no478_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:23 2005CHROMAT_FILE: MSMg01no478_k01.g1 PHD_FILE: MSMg01no478_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCAATACGACTCACATTTCGAAAACAGAGCCGCGGAATCNTTG
ATAGCTGCAGTGAGACGAGNCTAAATAGCAGCTAGGGGCTCAGGAGGGAG
ACCCTGTCTCACCATATACAATGGAAAATGTTTGAAGAAGAAATCTGATA
TTACTCTGGGGCCTCCACACATGCAAAATCGAATGCACCACACACACACA
CACACACACACACACACACACACACACACACACATACGGTTTTTTTTATG
GTAATGGCTAGTCTCATGTGCCAACTTGGCTAGGCTCTAGCACTCAGNTC
TTTAATTTTTATGTTTCTGGGCANNGCNATGANATGAACAACACCNAGAT
TAGTTAACTTAACAGAGATCACTTCCGCAAGGAGGCTGGACTTCATCCAG
TCAATATCATCAAGTCCCAAAGAGTAGACTAGACCCCTCAGAGAAGAGGA
AACGGTACCTCAATATTGCTAGGACTCTTCTGGACTGGTGTGACGATCAC
CCTAAAGACATTTCAACCTGCCAACCTTATGTTATATGAACCAGCTCCTG
GAAACAACAACAGAAAAACAATACAAACAAACAAAAACCCAACCACCACC
AACAGCAATCTCTTCATATAATGCCCTGCTGGCCTATTCCTCTGTATATT
TGTCTGGCCCTAAAATCTGAGCCCACAAAGCTAAATGGACATGGGATGCA
TGAATAACCCTGTGGTTCAGGCATTGAACACTTAAT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TACTCGAGGAATTCTGTGGGGCAAGCTACACGGAAGTCCATCAGGCTCAG
CCTTTAAGTTGTTCTCCGTTGCTGAGTCAGCGAGGATTGTGTTCAGCTCT
GAGTTACTGTACGCAGCCACAAACAGCCATGGGGACCAAAAGAAAAGGCT
CATGTTTTTAAAGCAGGAATTCAGGGCAGAGGTGGCCACTAAAGGATCAG
TAGACAGCCTCTAGGCCAGTGCTGCCTGCAAGAGCTATGATGTGAGCCAA
ACGAGCATTGTTAGGAAATGGTGGGATGACGGAGACACTTTATTTTATGT
GGAGGAATCCCGTGGAACTGGAGTTACAGGTGTTTGTGATCTGCCATGTG
GATGCTGGAAACTGAACTTGAGTCCTCTGGGAAAACAGCAAATGTTCTTA
ACCTCTAAGTAATCTCTAAGCTGTTGAAATAACTTTAAATGTCACACACA
CGCACACACATACACACACACACACACACACACACACACACACACACACA
CACACACACACACACGGGTGGTGGAACCTATTCCCTCAGGCCCATCCCTG
GAATTCTGTAGAGGAAAGACATTATTCTAAGGACCCTTCTCTAGAGGACA
ACTGTTTATTTAATCCAAGGAGAGAATGTACTGGGAGGGTTACTACCCCT
TCTGGTTTTTTTTTTATCTACTTTACCGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_k01.g1 MSMg01no478_k01.g1 CHROMAT_FILE:
MSMg01no478_k01.g1 PHD_FILE: MSMg01no478_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:23 2005
         (474 letters)



>mm_chr7_119422432_119423305
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtggggcaagctacacggaagtccatcaggctcagcctttaagttgttctccgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtggggcaagctacacggaagtccatcaggctcagcctttaagttgttctccgtt 260

                                                                       
Query: 61  gctgagtcagcgaggattgtgttcagctctgagttactgtacgcagccacaaacagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgagtcagcgaggattgtgttcagctctgagttactgtacgcagccacaaacagccat 320

                                                                       
Query: 121 ggggaccaaaagaaaaggctcatgtttttaaagcaggaattcagggcagaggtggccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaccaaaagaaaaggctcatgtttttaaagcaggaattcagggcagaggtggccact 380

                                                                       
Query: 181 aaaggatcagtagacagcctctaggccagtgctgcctgcaagagctatgatgtgagccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggatcagtagacagcctctaggccagtgctgcctgcaagagctatgatgtgagccaa 440

                                                                       
Query: 241 acgagcattgttaggaaatggtgggatgacggagacactttattttatgtggaggaatcc 300
           ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 acgagcagtgcaaggaaatggtgggatgacggagacactttattttatgtggaggagtcc 500

                                                                       
Query: 301 cgtggaactggagttacaggtgtttgtgatctgccatgtggatgctggaaactgaacttg 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catggaactggagttacaggtgtttgtgatctgccatgtggatgctggaaactgaacttg 560

                                                                       
Query: 361 agtcctctgggaaaacagcaaatgttcttaacctctaagtaatctctaagctgttgaaat 420
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 561 agtcctctgggaaaacagcaaatgttcttaacctctaagtaatctctaggttgttgaaat 620

                                                                 
Query: 421 aactttaaatgtcacacacacgcacacacatacacacacacacacacacacaca 474
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aactttaaatgtcacacacacgcacacacacacacacacacacacacacacaca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)