BAC Information

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BAC

Clone NameMSMg01-479J23
Chromosome7 (Build37)
Map Location 30,754,552 - 30,946,617
singlet/doubletdoublet
Overlap geneLOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146
Upstream geneEif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74
Downstream geneEG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479J23.T7 (MSMg01no479_j23.b1)MSMg01-479J23.TJ (MSMg01no479_j23.g1)
ACCAG560458AG560459
length809794
length of high quality
(start - end)		254 (70 - 323)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no479_j23.b1 PHD_FILE: MSMg01no479_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:41 2005CHROMAT_FILE: MSMg01no479_j23.g1 PHD_FILE: MSMg01no479_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,754,552 - 30,754,802)(30,946,372 - 30,946,617)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAA
TTCACGTCAGGTACTCACTCCTACCACCCAGTCCAGGCAGTCACCAAGTC
CTATAAATGCCATCTTCTAAGTATTTCTGGAATTTATGTTCTTTTCTCTG
ATTTTAGTGTTGATTACAACTATACAGTTTTCATGGGTTTTCTACTGTCT
CCTATTACTATCTTCAAATCTATTTTCCATAATATGCAAAAAATTATTTT
TACTTTGAGGTGGGATGTTGTGTAGTACAAGCTGGCCTTAGACTCACATG
TACAAAATAGAAAACCCAGCCTGTTTTTTGGTGGNACACGCCTTTAATCC
CANCACTCAAGATGTATACGCATGCGGATTTCTGAGTTCCAGGTTATCCT
GGTCTACAGAGTGACCCCCCCCATTTTTTTTTCTTTACTGAGAAACCCTG
TCTTGTTCTAATAAACATATGAAAGAATACACTTGACCATACCAATATTC
CTGCAATACTTAGTCCTTTGTTTGTTCATAGCCTCTTTCCCTTCTACTTG
AGTAATTTCCTACTGTTTCGTTTACGCCCTCCTATATATTTGTTGTATTC
CTTAAAAACCTTTCATGCCTCGGTGCTTCAGTTTCTGCCCCCCTTTCTCT
GTTTCTAATGCCTCGTTTTTTTTTTTTTCTTTCGTTTTAGCCCTATTCTA
TTGCCCTTTTTCCGTTAATTTTTGCGGTTCATCGTCTCTCTGCCCTTTTA
GGATCTCTTCCTTATGCTCCTTATTTGCCTTTTCCTCGCCCCTATTTCTA
CCCCACCCT

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCAGAAATTCAAATGAAGGGAAAGACGTGTGTATGATAC
AGGCCTGCAATCAGCGAATGCAGCGGCGGAAAAGCAGAGCAGTGCTGAAC
TGTGAACACAGTCATCTGCGGTCAAGAGTGGCAGGCAGGCAGGCCTGTTG
TGACGGCTGTCAGTGTGGATCTGCGGGTTGTCACTAGTCCAGGTACCGAG
GACTGACGTTATAGAGTGACACTGTCCATTTACCAGGACTTAGAACATGA
AAACACTTGCTTCAGCTGATCATCATTACGACGTTTGGAGGTGAAACCTG
CACACCACAAACTATAACCGATAGTAAAAGTCAGATATATGGGGGGTATT
GAAAGCAGAAATAAACAAATGCTATACTTTATACAAGGTTGACTTTGGGA
GTGGGAAAACATTCCTTGTAATATTTGAAAATACTTAGAAATTCTCATGA
GTATTTATGCTCAGGAGGTGAGGCACTAGGAAATTGACCATGACTTAATT
TAGACTAGCCAAATGTTAGAACTGAACTGCCTGTTGGAAATGGAATGAGA
AAATTTTTGGTGGACTGTTACGCAGACATCTGGCAGATGCAACACACGAA
GTGTGTGTGTATCTGGAAAGACTCTGGAAACGATGTTGAGGGAAACTCAA
TGTTCAGGATGGTTTAAGAATTGGCGCCTTCTTGTTAAAATTTTCCTTCT
GGAAACCCACGTTTTTTGGCATTTATACTCTGAAATGTTGTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_j23.b1 MSMg01no479_j23.b1 CHROMAT_FILE:
MSMg01no479_j23.b1 PHD_FILE: MSMg01no479_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:41 2005
         (254 letters)



>mm_chr7_30754352_30755005
          Length = 654

 Score =  439 bits (227), Expect = e-128
 Identities = 245/251 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaccacccagtccaggcagtcaccaagtcctataaatgccatcttctaagtatttctg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cctaccacccagtccaggcagtcaccaagccctataaatgccatcttctaagtatttctg 260

                                                                       
Query: 61  gaatttatgttcttttctctgattttagtgttgattacaactatacagttttcatgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttatgttcttttctctgattttagtgttgattacaactatacagttttcatgggtt 320

                                                                       
Query: 121 ttctactgtctcctattactatcttcaaatctattttccataatatgcaaaaaattattt 180
           |||||| |||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 321 ttctaccgtctactattactatcttcaaatcttttttccgtaatatgcaaaaaattattt 380

                                                                       
Query: 181 ttactttgaggtgggatgttgtgtagtacaagctggccttagactcacatgtacaaaata 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactttgacgtgggatgttgtgtagtacaagctggccttagactcacatgtacaaaata 440

                      
Query: 241 gaaaacccagc 251
           |||||||||||
Sbjct: 441 gaaaacccagc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no479_j23.g1 MSMg01no479_j23.g1 CHROMAT_FILE:
MSMg01no479_j23.g1 PHD_FILE: MSMg01no479_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:41 2005
         (246 letters)



>mm_chr7_30946172_30946817
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaagggaaagacgtgtgtatgatacaggcctgcaatcagcgaatgcagcggcggaaa 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 aatgaagggaaagacatgtgtatgatacaggcctgcaatcagcgaatgcagcggtggaaa 387

                                                                       
Query: 61  agcagagcagtgctgaactgtgaacacagtcatctgcggtcaagagtggcaggcaggcag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 agcagagcagtgctgaactgtgaacacagtcgtctgcggtcaagagtggcaggcaggcag 327

                                                                       
Query: 121 gcctgttgtgacggctgtcagtgtggatctgcgggttgtcactagtccaggtaccgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcctgttgtgacggctgtcagtgtggatctgcgggttgtcactagtccaggtaccgagga 267

                                                                       
Query: 181 ctgacgttatagagtgacactgtccatttaccaggacttagaacatgaaaacacttgctt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagacgttatagagtgacactgtccatttaccaggacttagaacatgaaaacacttgctt 207

                 
Query: 241 cagctg 246
           ||||||
Sbjct: 206 cagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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