BAC Information

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BAC

Clone NameMSMg01-480N20
Chromosome7 (Build37)
Map Location 18,756,430 - 18,756,747
singlet/doubletsinglet
Overlap genenone
Upstream genePsg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12
Downstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480N20.T7 (MSMg01no480_n20.b1)MSMg01-480N20.TJ (MSMg01no480_n20.g1)
ACCAG561404AG561405
length719723
length of high quality
(start - end)		597 (54 - 650)322 (325 - 646)
definitionCHROMAT_FILE: MSMg01no480_n20.b1 PHD_FILE: MSMg01no480_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:18 2005CHROMAT_FILE: MSMg01no480_n20.g1 PHD_FILE: MSMg01no480_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAT
GGGCGGAATTCCCAGGGATACCTTTAAAATCTGCCTAGACCCACCCCATA
CTAGATGGAAACAGGAGTTTTGTATAACATAGTGAGCAGGATGAAGGTCC
CTGTATCCTACATATGCTGGTTGGATCAGGGCAGGTCATATTTGATGTCT
TGACCTGTTGTAGTCCTAGACATGAGACACCATTTCTCCCAGAGAAGACC
AGGGCTGATACAAGGTTCCACACTCAACCCCCAAGACAGTTGTTTCCCTG
AGCTATGACCTTGCCTAGGAGACTACTTTCCATACCTCTTCCTACTAACC
TGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTCTCGAAAATACTCTGTTTCTTGTGTTTATGGATACCCCTCTCT
CTCTGGTTATCCTGAAATTTCCCTCCCTCCTGGCATCTACCAAGGGGAAT
ACAGAACCCTTGCTGCAGAAATTAACCAGACAAAGGACATAGGTGACACA
GGGAGACTAGAGAGCAGTTGGGCTCATCCAACACACAGTCCAACCAACCC
ATAATGCTAGAAGGTTGCCTGGAAACAGTCCATAGGTGAGGAGCCCACAG
TCCTTTCCAGGACACACAGGTCACTTCTTTCCCATTACAAAGAACATTAA
ATCCCCACACAGCTGCTCT

NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAAGAAATCTCCATGGTTCCTGATCCCTCTGTGAGA
TGTCTTTGTTTCCAGCCTGACATAGAAACTAATGGAAGAACCTTTGCCCA
CCTGATGGATTTCTCTCCATCCTTGAGTCTCTAGTAACTTGATGTTACTC
CTGAGAGCAATGGGAAAAGAAGACAGCAGGATGTCTGCACTGACATGGAC
TACAGCTATTGTCTGTGTTTCTTTGTTACCATCAGACAATAGAATTGCAA
CAACCTACCGCATGTGTGTTGNTTCTGTTTATATAATGAAAATAAAATAA
GTAATAATACTAACATTGTTTAGGGAAATAATTAACATGTTCTCAAATGT
GCCAAGGCACACAGAGCCTTTGCTTTCAATAACACTGCTGTTGTTTTCCA
ACAGAACAAATATTTTTTTTCTGAAGACACTGCCTGACTTTTATTTATAC
CTAATCATGGAGAGACAAAAGCAATGCTATAGAATAGTTTGTGGTGTGAA
TGTTGCCATTGTACTTACTGTAGAAAATGACCTACATCCCACACTTCAAG
TGTAGCTTTGAAGTATCTACTCATGGTGAAGATGGAAAAATGGCTCAGTA
GCTAACAGCACTGGCTGTTCTTCCAGAAAACCTGGGTTCAATCACTATCC
CCCACATGGGAGACCACAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_n20.g1 MSMg01no480_n20.g1 CHROMAT_FILE:
MSMg01no480_n20.g1 PHD_FILE: MSMg01no480_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:18 2005
         (322 letters)



>mm_chr7_18756230_18756951
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtttatataatgaaaataaaataagtaataatactaacattgtttagggaaataatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtttatataatgaaaataaaataagtaataatactaacattgtttagggaaataatta 260

                                                                       
Query: 61  acatgttctcaaatgtgccaaggcacacagagcctttgctttcaataacactgctgttgt 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acatgttctcaaaagtgccaaggcacacagagcctttgctttcaataacactactgttgt 320

                                                                       
Query: 121 tttccaacagaacaaatattttttttctgaagacactgcctgacttttatttatacctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaacagaacaaatattttttttctgaagacactgcctgacttttatttatacctaa 380

                                                                       
Query: 181 tcatggagagacaaaagcaatgctatagaatagtttgtggtgtgaatgttgccattgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggagagacaaaagcaatgctatagaatagtttgtggtgtgaatgttgccattgtac 440

                                                                       
Query: 241 ttactgtagaaaatgacctacatcccacacttcaagtgtagctttgaagtatctactcat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactgtagaaaatggcctacatcccacacttcaagtgtagctttgaagtatctactcat 500

                             
Query: 301 ggtgaagatggaaaaatg 318
           ||||||||||||||||||
Sbjct: 501 ggtgaagatggaaaaatg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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