BAC Information

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BAC

Clone NameMSMg01-480O21
Chromosome7 (Build37)
Map Location 99,861,971 - 99,862,234
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg2, Ccdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007
Downstream gene4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O21.T7 (MSMg01no480_o21.b1)MSMg01-480O21.TJ (MSMg01no480_o21.g1)
ACCAG561454AG561455
length731725
length of high quality
(start - end)
654 (78 - 731)323 (325 - 647)
definitionCHROMAT_FILE: MSMg01no480_o21.b1 PHD_FILE: MSMg01no480_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:23 2005CHROMAT_FILE: MSMg01no480_o21.g1 PHD_FILE: MSMg01no480_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATGGGC
GGAATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGT
TCTGTTCAGGAATCTTTCCCCTGTTTTTATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTG
CCCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTT
TTATCCTTGAGAAGAGTTTTTGCTATCCTAG
CCATGATGTGGGAGGCCTGGNGGGGNCTGGCTTTCTCATCGGGTGAACNA
NAGAAGGATGGCGATACTCTGACATAGNCCAGGCTGACCTTAAATTTGCA
GTGATCTGCCTGTCTTTCCTTTTCAAGTGCTTGGTCTCTTCCATACTGTA
AAACATTAAGTCATTATGAAATTCAGTATGGTAGTTACCAGTTTTAAAAG
ATTTATTTTAAAGGTTATGTGCTTATGTGTGTATCTGTGTGGACATATTT
TCATGTGAGTGGAAGGGCTCTCAGAGGCTAGAAGAGAAGCCGATCCCCTG
GAACTGGGGTTACTGGCTGANGTGAGCTGCCTGATGTGGGTGCTGGGAAG
CATGCTCAGGTCCTCTGCAAGAGCAGTGCACAGTCTTAACCTCTCAACCA
TCTCTCCAGCCTACAATTTTTCTTTGTCATGTGGTGCTGGGACATAAACT
AACTGGGAGCCACACTCCCATAGGAGTGTCATAGGCAAAGGAGTCAAGGT
ACTTGGGGACAGCATGGAGTTATAGTTCTTGAACTTAGTAGTAGTTGTGA
CCATTTTTATTTTGTGATCATTCACTGAATTATATATTTCTGGGTTTTTA
CCTTTTCTATGTATATATTCCATTTTCAATCTGATGGCAGGTTAAAGTAT
TGTATTAAAAGGCACAGTTATGACTGAAGCAGGATAATTATAAGTTGGAG
CCAATTCAGAGTTACATAGTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o21.g1 MSMg01no480_o21.g1 CHROMAT_FILE:
MSMg01no480_o21.g1 PHD_FILE: MSMg01no480_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
         (323 letters)



>mm_chr7_99861771_99862493
          Length = 723

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgcctgatgtgggtgctgggaagcatgctcaggtcctctgcaagagcagtgcacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgcctgatgtgggtgctgggaagcatgctcaggtcctctgcaagagcagtgcacagt 260

                                                                       
Query: 61  cttaacctctcaaccatctctccagcctacaatttttctttgtcatgtggtgctgggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cttaacctctcaaccatctctccagcctacaatttttctttgtcatgtggtgctggggca 320

                                                                       
Query: 121 taaactaactgggagccacactcccataggagtgtcataggcaaaggagtcaaggtactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaactaactgggagccacactcccataggagtgtcataggcaaaggagtcaaggtactt 380

                                                                       
Query: 181 ggggacagcatggagttatagttcttgaacttagtagtagttgtgaccatttttattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggacagcatggagttatagttcttgaacttagtagtagttgtgaccatttttattttg 440

                                   
Query: 241 tgatcattcactgaattatatatt 264
           ||||||||||||||||||||||||
Sbjct: 441 tgatcattcactgaattatatatt 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)