BAC Information

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BAC

Clone NameMSMg01-481A09
Chromosome7 (Build37)
Map Location 139,254,015 - 139,426,510
singlet/doubletdoublet
Overlap geneCpxm2
Upstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481A09.T7 (MSMg01no481_a09.b1)MSMg01-481A09.TJ (MSMg01no481_a09.g1)
ACCAG561526AG561527
length748753
length of high quality
(start - end)		626 (39 - 664)650 (69 - 718)
definitionCHROMAT_FILE: MSMg01no481_a09.b1 PHD_FILE: MSMg01no481_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005CHROMAT_FILE: MSMg01no481_a09.g1 PHD_FILE: MSMg01no481_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,254,015 - 139,254,635)(139,425,864 - 139,426,510)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
CTCTCTGTTCTCTTTTTCCCCACCTTTCCAGCCAGAACCTATCCTTTGGC
CATCAACTCTAAGGAGAAGAGCTTTACCATTGCCTGTCCTGGCCCTGTGC
TCCCAGCATACTTGATTATGATAAAGCCTCTTGCTACAAACTGAATGTCT
GTGTACCTCAGCTGAAATCTAATAGAGGCAAGAGTATTAAAGGGGAAACG
TTGAGTCCAGCAAGATGGCTCAATAGGCGAATACCCTGACCTGAGTCTCA
TCCTGGGGACCCACATACTTTAAGGAGAAAACCAACTCCCACAAGGTGTC
CTGTGGCTGCAGCAAGAGCACAGATGCACGTATGTGCTCACATCCTAACA
CATCTTACAAATAAACATTATACAGTTATTTATAAAAAGAAGTGAAGCAT
TGGATGGTAATTATGTCATGTGGGTGCAGACTTCGTAAACAGGATAAGAA
CCCTTCAAAAGAGACAGAGAATTTGTGTTCTCCATATGTGCAGAGAGGAC
ACACACACATGAACTAGTAGGGAAGCCCTCCCTCAGTAGGCACTACATTG
GCCAGCACCTTGAGCCTAAGTTTTTAGCCTCTAGAACTGCAAACAAGGCA
CTTTTATTGGCTGCTAGCCAGCTACTTGACATTTCCATTCCAACCGTTTC
TACAGAGTAAAGCGTCTTCCTGGGCTGGGATCATCACCTCTCTCAGAG

CTAGGGGAGGGCGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTTTTTACTCAGAGGCTCAACCCATTTGGG
ACGTCAACACATCAATTTGAGGAGAGGAGTAGTTGCAAGAGGGCTTACTT
CCCACTTAGAAGCTTGGATCATGCTGAGCACAGCGTGGTCCTTTGGTCAG
TCCCACCTTTCTCCCAAGCCCTGCTCCTCATTGTGATGTGTTGAGTGTGG
AGCTAGACTTAGCACAGCCTGGGGCTGGCTTCCCTCAGCAAGAATGCTGC
TGTCTGAGAGGATAGCGGGTGGTGGATTTGAGAAGCCAGACAGGCTAGGG
CATACTTCTGAAAGCTAGAGTTCCCTGTGCCTGGAGCTCTCCCCTACCCT
TGCTGCTAGGAAACAGCCTGGGTGGTGCTGTGCAGAATGGTATTTCTCTG
TTGGGGTGGAGACTACATCCCGAGGAGAGCCTTGGGCCCTGTGGGTGAGG
CCAATCTAGTGGAGACTTGCAGGAAAAATGAGCTTTGAGGAGTTTGGTTT
TCCCTGAGCTTTGGAACCAGCTCCCCTGAGGGGCACCAGGGAAAGAATGT
GGCGGGGCAGGGACTGTGAGCTTTTAGCCACTGCTGCAACAAAATCACTT
CATCTGAAATGGCTGGCGATCCCAGAGAGCTCTGAGGAGTAACCCCCTTA
GTCCAGGCTTTTGGAAGAATGGCCTGCAGCCTCGCTAACATCTATCTCTG
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_a09.b1 MSMg01no481_a09.b1 CHROMAT_FILE:
MSMg01no481_a09.b1 PHD_FILE: MSMg01no481_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:30 2005
         (626 letters)



>mm_chr7_139253810_139254835
          Length = 1026

 Score = 1123 bits (581), Expect = 0.0
 Identities = 611/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctctctgttctctttttccccacctttccagccagaacctatcctttggccat 65
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctctctggcctctttttccccacctttccagccagaacctatcctttggccat 265

                                                                       
Query: 66  caactctaaggagaagagctttaccattgcctgtcctggccctgtgctcccagcatactt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caactctaaggagaagagctttaccattgcctgtcctggccctgtgctcccagcatactt 325

                                                                       
Query: 126 gattatgataaagcctcttgctacaaactgaatgtctgtgtacctcagctgaaatctaat 185
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 gattatgataaagcctcttgctataaactgaatgtctgtgtacctcagctgaaatctaat 385

                                                                       
Query: 186 agaggcaagagtattaaaggggaaacgttgagtccagcaagatggctcaataggcgaata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaggcaagagtattaaaggggaaacgttgagtccagcaagatggctcaataggcgaata 445

                                                                       
Query: 246 ccctgacctgagtctcatcctggggacccacatactttaaggagaaaaccaactcccaca 305
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 446 ccctgacctgagtctcatcctggggacccacatactggaaggagaaaaccaactcccaca 505

                                                                       
Query: 306 aggtgtcctgtggctgcagcaagagcacagatgcacgtatgtgctcacatcctaacacat 365
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 aggtgtcctggggctgcagcaagagcacagatgcacgcatgtgctcacatcctaacacat 565

                                                                       
Query: 366 cttacaaataaacattatacagttatttataaaaagaagtgaagcattggatggtaatta 425
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttacaaataaacgttatacagttatttataaaaagaagtgaagcattggatggtaatta 625

                                                                       
Query: 426 tgtcatgtgggtgcagacttcgtaaacaggataagaacccttcaaaagagacagagaatt 485
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 626 tgtcatgtgggtgcagacttcgtaaacaggataagaacccttcaaaagagacagagaact 685

                                                                       
Query: 486 tgtgttctccatatgtgcagagaggacacacacacatgaactagtagggaagccctccct 545
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 686 tgtgttctccatatgtgcagagaggccacacacacatgaactagtagggaagccctccct 745

                                                                       
Query: 546 cagtaggcactacattggccagcaccttgagcctaagtttttagcctctagaactgcaaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagtaggcactacattggccagcaccttgagcctaagtttttagcctctagaactgcaaa 805

                                
Query: 606 caaggcacttttattggctgc 626
           |||||||||||||||||||||
Sbjct: 806 caaggcacttttattggctgc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_a09.g1 MSMg01no481_a09.g1 CHROMAT_FILE:
MSMg01no481_a09.g1 PHD_FILE: MSMg01no481_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:30 2005
         (650 letters)



>mm_chr7_139425661_139426710
          Length = 1050

 Score = 1197 bits (619), Expect = 0.0
 Identities = 640/647 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   tttttactcagaggctcaacccatttgggacgtcaacacatcaatttgaggagaggagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tttttactcagaggctcaacccatttgggacgtcaacacatcaatttgaggagaggagta 791

                                                                       
Query: 64  gttgcaagagggcttacttcccacttagaagcttggatcatgctgagcacagcgtggtcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gttgcaagagggcttacttcccacttagaagcttggatcatgctgagcacagcgtggtcc 731

                                                                       
Query: 124 tttggtcagtcccacctttctcccaagccctgctcctcattgtgatgtgttgagtgtgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttggtcagtcccacctttctcccaagccctgctcctcattgtgatgtgttgagtgtgga 671

                                                                       
Query: 184 gctagacttagcacagcctggggctggcttccctcagcaagaatgctgctgtctgagagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gctagacttagcacagcctggggctggcttccctcagcaagaatgctgctgtctgagagg 611

                                                                       
Query: 244 atagcgggtggtggatttgagaagccagacaggctagggcatacttctgaaagctagagt 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 610 atagcgggtggtggatttgagaagccagacaggccagggcatacttctgaaagctagagt 551

                                                                       
Query: 304 tccctgtgcctggagctctcccctacccttgctgctaggaaacagcctgggtggtgctgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tccctgtgcctggagctctcccctacccttgctgctaggaaacagcctgggtggtgctgt 491

                                                                       
Query: 364 gcagaatggtatttctctgttggggtggagactacatcccgaggagagccttgggccctg 423
           ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 490 gcagaatggcatttctctgttggggtggagactgcatcctgaggagagccttgggccctg 431

                                                                       
Query: 424 tgggtgaggccaatctagtggagacttgcaggaaaaatgagctttgaggagtttggtttt 483
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgggtgaggctaatctagtggagacttgcaggaaaaatgagctttgaggagtttggtttt 371

                                                                       
Query: 484 ccctgagctttggaaccagctcccctgaggggcaccagggaaagaatgtggcggggcagg 543
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 370 ccctgagctttggaaccagctcccctgaggggcaccagggaaagaacgtggcggggcagg 311

                                                                       
Query: 544 gactgtgagcttttagccactgctgcaacaaaatcacttcatctgaaatggctggcgatc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gactgtgagcttttagccactgctgcaacaaaatcacttcatctgaaatggctggcgatc 251

                                                          
Query: 604 ccagagagctctgaggagtaacccccttagtccaggcttttggaaga 650
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 250 ccagagagctctgaggagtaacccccttagtccaggcctttggaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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