BAC Information

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BAC

Clone NameMSMg01-481B24
Chromosome7 (Build37)
Map Location 50,709,248 - 50,709,910
singlet/doubletsinglet
Overlap geneEtfb
Upstream geneLOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2
Downstream gene2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481B24.T7 (MSMg01no481_b24.b1)MSMg01-481B24.TJ (MSMg01no481_b24.g1)
ACCAG561604AG561605
length724850
length of high quality
(start - end)		667 (49 - 715)---
definitionCHROMAT_FILE: MSMg01no481_b24.b1 PHD_FILE: MSMg01no481_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:38 2005CHROMAT_FILE: MSMg01no481_b24.g1 PHD_FILE: MSMg01no481_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTAAACTGTACCCAAGTGCTGATCCCAAGAACAAACCAAAG
AGACAGGTCCTGGTAGGGTTGGGGTCCAGGTATCCCTGGTATCAGATGTT
GGCATCCTGGCATTTAGCAGGTCCAGCAATGCCAGGGCTTCCTCCTCATG
TTTCAGCTTGAGTCCTGTGCCCATCCCGGAACCAGTCCGTGGAGTAAGGA
GGGGGTGTGGATAGAATGTTCGTGCTGGCTTTGCTTTTGTTCCCCTGGGT
TTCTGCTAGGGCTGGCACATGTCCTGGCTGCCTTAGAAGTAGGTAAATGA
ATGACTGTACAGAGGTCAACAGGAATGCCAGGCTGCTCCACATCCCTGCA
CACGTGACTGCTTATTGTTTCCGTCCCAGGGAGGAAATCATTCTAGACCA
GGAATCGGCAATCTATAGCTCCAGGCAGCATCTGCTTTGCCAATAAAGTT
TTATTGGTACAGCCATATGTGTTCATTTACATGTCACCTATAGCTTGAGT
GCTATGTGACCTGCTTGAACAGCTTGGAAAGCCTCAAGTATTTCTTGTTT
TGCCTGCTGAGAACTGTTACCGATAAGAAGTCTAAACGGGCTGGCACAAG
CCCGGCCACCATCACAAAGCCTCTCCTCTCTCTCCCTGTTAGGCTATTGA
TGATGACTGTAACCAGACAGGTCN

NAGGTGGAGATTTAAATTNNNNCCCGNATGGACTAAGTGTGGTTAGGGCC
CTGGGGCGGGACCGACCCCTGGGNNCCGTTTTCTCCAAAAATTTAATTAG
GGGGGGGGAAAAAAACCCTTTTTATTTTAANNAAAAGGGATTTTCCCGGA
AAAAATTTAAGAAAAATTTTTTTTTCAATTGGGGGGGAAAAGGGGGGGGG
GAAAAAAAAAAAAGGGGGTGTTTCCCCGGGGAGAAAAAAAAAAAATGGTG
TTAAAAAAAGGAATACTCACGGGGGGGGGGAGAATTTTTAAAAAATTTTT
TTCTGGGGGGAAAAGGGGGGAACCCCGGGAAAAAACCTTTTTATAAAAGA
AAAAAAGGGGGGGGTGAAAATTTTTAAAAGAAAAATTTAAAAAGGGGTTT
CTTTAAAAAAAAAAAGGGGGGGGAGAGAAATTTTTTTTTTTTAGCTCCCC
GCCGCCGGGGCATTTTTTTTTTTTTTTAAAAAAAAAAATAAAAAAAAGGG
GGGGTTCTTTTTTTTTTTATAAAGAGGGGGGGGGGGAAAAAATTCTCTTT
TTCTCTGGGGGGGGTGGGGGGGGGGGGGGAAGGCTCAAAATATTATTTTT
TTGGGGTTGGGAGGGGAGAGAGAAAACTTTATTTTTTTTTTTTTTTTTTT
TTCCTTCNCGCCNGNGAGGGCGGGGCNCACAATAATAAAATAAGTGGGTA
TTGGCTTTTTCTTTGTTTTTTTATTAAATGTTTCTCTTTTTATTTTCTCT
TTTTAAATAAAAAAAAAAAANANNNNTTGTTGGGTTTGGACNNTCCACAC
CAAAAAATAAAAAAAAAAAAACCTATATCTTTTCTCCNTCCCCCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_b24.b1 MSMg01no481_b24.b1 CHROMAT_FILE:
MSMg01no481_b24.b1 PHD_FILE: MSMg01no481_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:38 2005
         (667 letters)



>mm_chr7_50709044_50710110
          Length = 1067

 Score = 1160 bits (600), Expect = 0.0
 Identities = 648/664 (97%), Gaps = 2/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctaaactgta-cccaagtgctgatcccaagaacaaaccaaagagacaggtcct 63
           ||||||||||||||| |  |||||||||||  ||||||| ||||||||||||||||||||
Sbjct: 205 gaattccctaaactg-aggccaagtgctgaaaccaagaagaaaccaaagagacaggtcct 263

                                                                       
Query: 64  ggtagggttggggtccaggtatccctggtatcagatgttggcatcctggcatttagcagg 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 ggtagggttggggtccaggtatccctgttatcagatgttggcatcctggcatttagcagg 323

                                                                       
Query: 124 tccagcaatgccagggcttcctcctcatgtttcagcttgagtcctgtgcccatcccggaa 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccagcaataccagggcttcctcctcatgtttcagcttgagtcctgtgcccatcccggaa 383

                                                                       
Query: 184 ccagtccgtggagtaaggagggggtgtggatagaatgttcgtgctggctttgcttttgtt 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 ccagtccgtggagtaaggagggggcgtggatagaatgttcgtgctggctttgcttttgtt 443

                                                                       
Query: 244 cccctgggtttctgctagggctggcacatgtcctggctgccttagaagtaggtaaatgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccctgggtttctgctagggctggcacatgtcctggctgccttagaagtaggtaaatgaa 503

                                                                       
Query: 304 tgactgtacagaggtcaacaggaatgccaggctgctccacatccctgcacacgtgactgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgactgtacagaggtcaacaggaatgccaggctgctccacatccctgcacacgtgactgc 563

                                                                       
Query: 364 ttattgtttccgtcccagggaggaaatcattctagaccaggaatcggcaatctatagctc 423
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 ttattgtctccgtcccagggaggaaatcattctagaccaggaatcggcaatccatagctc 623

                                                                       
Query: 424 caggcagcatctgctttgccaataaagttttattggtacagccatatgtgttcatttaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caggcagcatctgctttgccaataaagttttattggtacagccatatgtgttcatttaca 683

                                                                       
Query: 484 tgtcacctatagcttgagtgctatgtgacctgcttgaacagcttggaaagcctcaagtat 543
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtcacctatagcttgagtgctgtgtgacctgcttgaacagcttggaaagcctcaagtat 743

                                                                       
Query: 544 ttcttgttttgcctgctgagaactgttaccgataagaagtctaaacgggctggcacaagc 603
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 744 ttcctgttttgcctgctgagaactgttaccgataagaagtctaaatgggctggcacaagc 803

                                                                       
Query: 604 ccggccaccatcacaaagcctctcctctctctccctgttaggctattgatgatgactgta 663
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 804 ccggccaccatcacaaagcccctcctctctctccctgctaggctattgatgatgactgta 863

               
Query: 664 acca 667
           ||||
Sbjct: 864 acca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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