Query= MSMg01no481_c19.b1 MSMg01no481_c19.b1 CHROMAT_FILE:
MSMg01no481_c19.b1 PHD_FILE: MSMg01no481_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:43 2005
(635 letters)
>mm_chr7_129651017_129652050
Length = 1034
Score = 797 bits (412), Expect = 0.0
Identities = 433/440 (98%), Gaps = 2/440 (0%)
Strand = Plus / Minus
Query: 197 ggatggcatctcctgtgaattcccaagagccctcaga-aattttttttattgacagaaca 255
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1034 ggatggcatctcctgtgaattcccaagagccctcagacatttttttttattgacagaaca 975
Query: 256 attgcacatctttatgggacacattgtgatggtttagtatgtttatatattgtgtattga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 attgcacatctttatgggacacattgtgatggtttagtatgtttatatattgtgtattga 915
Query: 316 tcaactcaaagaacctaggcccttcatcatctcagacacttctcttttctatatgataag 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tcaactcaaagaacctaggcccttcatcatctcagacacttctcttttctatatgataag 855
Query: 376 accattcaaaagcctttctcccagacagtttggattagtttctagttttacttctctgag 435
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 854 accattcaaaagcctctctcccagacagtttggattcgtttctagttttacttctctgag 795
Query: 436 ttctttacatccaagcccccatccttggtggctccctttcctctggcaaatgtggttctc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttctttacatccaagcccccatccttggtggctccctttcctctggcaaatgtggttctc 735
Query: 496 tttccaaatcctgctcatagggggacacttttcagcaaggccttccgtgatgcttgcctt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttccaaatcctgctcatagggggacacttttcagcaaggccttccgtgatgcttgcctt 675
Query: 556 agacagcttgaggtcaccttgtaattccggtcttcagccacagtttgagcctcacaggtc 615
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 674 aggcagcttgag-tcaccttgtaattccggtcttcagccacagtttgagcctcacgggtc 616
Query: 616 cagtcaccctgctggggttc 635
||||||||||||||||||||
Sbjct: 615 cagtcaccctgctggggttc 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_c19.g1 MSMg01no481_c19.g1 CHROMAT_FILE:
MSMg01no481_c19.g1 PHD_FILE: MSMg01no481_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:43 2005
(586 letters)
>mm_chr7_129451318_129452308
Length = 991
Score = 1015 bits (525), Expect = 0.0
Identities = 579/603 (96%), Gaps = 17/603 (2%)
Strand = Plus / Plus
Query: 1 ccgttcctccagcccttgagtgttggcatcagagtcaggggccaccacactcctggtgga 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ccgttcctcctgcccttgagtgttggcatcagagtcaggggccaccacactcctggtgga 252
Query: 61 gacttaattatcactttcattatctttttcatgcttgtgttctatttatataaaatgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gacttaattatcactttcattatctttttcatgcttgtgttctatttatataaaatgtta 312
Query: 121 ctagttctccaattctagtgttttttttttttaaatttatttatggggctggagagatgg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 ctagttctccaattctagtgttttttttttttaaatttacttatggggctggagagatgg 372
Query: 181 ctcagcagttaagagtactgactgctgttccaaaggtctcgagttcaattcccagcaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctcagcagttaagagtactgactgctgttccaaaggtctcgagttcaattcccagcaact 432
Query: 241 acatgatggtttgtaaccatttatggtgggatctgacgccctcttctgtcatgctggcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acatgatggtttgtaaccatttatggtgggatctgacgccctcttctgtcatgctggcat 492
Query: 301 acatgcaaatacagcactcatataaatacatccatccatccatccatacatacatacat- 359
|||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 493 gcatgcaaatatagcactcatataaatacatccatccatccatccattcatccatccatc 552
Query: 360 -a------catactttaagcactttccatttatttaaggattctttgtctgttaataatg 412
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catccatccatactttaagcactttccatttatttaaggattctttgtctgttaataatg 612
Query: 413 aacactttgacaagcattaggaggtaagtcgttccttt-ag----gaggtagtcagggac 467
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 613 aacactttgacaagcattaggaggtaagtcgttcctttcagagtggaggtagtcagggac 672
Query: 468 ggctcatcagagattcaggatcttcccaaattttttcttcctcactggtgtctcctttct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggctcatcagagattcaggatcttcccaaattttttcttcctcactggtgtctcctttct 732
Query: 528 tggaccttcaaaagctcatacctaccacctacctactac-ac-ac-ac-acacacacaca 583
||||||||||||||||||||||||||||||||||||||| || || || |||||||||||
Sbjct: 733 tggaccttcaaaagctcatacctaccacctacctactactactactactacacacacaca 792
Query: 584 cac 586
|||
Sbjct: 793 cac 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 991
Length adjustment: 10
Effective length of query: 576
Effective length of database: 981
Effective search space: 565056
Effective search space used: 565056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
