Query= MSMg01no481_e05.b1 MSMg01no481_e05.b1 CHROMAT_FILE:
MSMg01no481_e05.b1 PHD_FILE: MSMg01no481_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:51 2005
(712 letters)
>mm_chr7_128580318_128581429
Length = 1112
Score = 1239 bits (641), Expect = 0.0
Identities = 693/713 (97%), Gaps = 11/713 (1%)
Strand = Plus / Plus
Query: 5 gaattctgccgcag-t-tgcacattggctgtggccaatcagaggtgcagctgatagaaac 62
||||||||| |||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagcagatgtg--cattggctgtggccaatcagaggtgcagctgatagaaac 262
Query: 63 catgttgcagcatctgcttcccagctagcacaggtgtggaaagggaaaggggtgaagagt 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 catgttgcagcatctgcttcccagctagcacaggtgtggaaagggaatggggtgaagagt 322
Query: 123 tcactagctcctaaggctcctgcaaggaagggctgagcaggcgccttgtaaatctgcttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcactagctcctaaggctcctgcaaggaagggctgagcaggcgccttgtaaatctgcttt 382
Query: 183 ctctggtttaccgttctcagaatctgcttgactgatgcagcagagcactcaattcagcaa 242
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 ctctggcttaccgttctcagaatctgcttgactaatgcagcagagcactcaattcagcaa 442
Query: 243 gtgacaagtgtacacttgaatagttaccatgtaaacccatggtttccagctccctggaca 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 gtgacaagtgtacacttgaatagttaccatgtaaacccacggtttccagctccctggaca 502
Query: 303 ttttgaagtgctggctatgggtcagggactacagtgtgttcctggcttagtaggagtcat 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 ttttgaagtgctggctatgggtcagggactacagtgtgttactggcttagtaggagtcat 562
Query: 363 ctccactcctggaagtagagtctgggagcagagttgctcctccacagtacgaatttcaat 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 563 ctccactcctggaagtagagtctgggagcagagttgctcctccacagtatgaatttcaat 622
Query: 423 gtatgtagtcttagttagggttttactgctgtgaacagacaccatgactagggcaattct 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 gtatgtagtcttagttagggttttactgctgtgaacagacactatgactagggcaattct 682
Query: 483 tatagaggaaaatatttaattggggctggcttacaggttcagaggtttagtccattatca 542
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 683 tatagaggaaaatatttaattggggcttgcttacaggttcagaggtttagtccattatca 742
Query: 543 tcaaggtggaagcatggcagtgttaggcaactagaagtaaggtctctcaaagcctatc-c 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 743 tcaaggtggaagcatggcagtgttaggcaactagaagtaaggtctctcaaag----tcac 798
Query: 602 ccacagtgacacacttcctccaacaaggccacacaccctaatagtgccacaaccatattc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ccacagtgacacacttcctccaacaaggccacacaccctaatagtgccacaaccatattc 858
Query: 662 aaaacacacacaca-a-acacatacacacacgatattatatataatatgtgga 712
|||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 859 aaaacacacacacacacacacatacacacacgatattatatataatatgtgga 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_e05.g1 MSMg01no481_e05.g1 CHROMAT_FILE:
MSMg01no481_e05.g1 PHD_FILE: MSMg01no481_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:51 2005
(689 letters)
>mm_chr7_128780824_128781912
Length = 1089
Score = 716 bits (370), Expect = 0.0
Identities = 416/448 (92%), Gaps = 27/448 (6%)
Strand = Plus / Minus
Query: 1 attctgttagcattttactttaagcctgtgttaatggtgcatttgctcagttcttattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 attctgttagcattttactttaagcctgtgttaatggtgcatttgctcagttcttattgg 389
Query: 61 attagaaatgtctttatatttttaaagaggaaatcatgtgtgcttattgatccatgtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attagaaatgtctttatatttttaaagaggaaatcatgtgtgcttattgatccatgtatg 329
Query: 121 ttttgttattaaacgatagttaaccttttgactgaggggtatctgctttaggcatgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttttgttattaaacgatagttaaccttttgactgaggggtatctgctttaggcatgacaa 269
Query: 181 agaaccagcagcaaggatcttctattttctagctgaaaatgtttctttatagttaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaaccagcagcaaggatcttctattttctagctgaaaatgtttctttatagttaaaaga 209
Query: 241 aggaaggattgtttagagagagaaagaaggagagaaaggaagtgagaaagaaaaaggaaa 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aggaaggaagggagagagagagaaagaaggagagaaaggaagtgagaaagaaaaaggaaa 149
Query: 301 gaaagaa------------agacagaaag---------------agagaaaggaaagaaa 333
||||||| |||||||||| ||||||||||||||||
Sbjct: 148 gaaagaaagaaagaaagacagacagaaagagagaaaggaaagaaagagaaaggaaagaaa 89
Query: 334 gagaaaggagaaaaaggaaagaaaggaactagaacaaaaatttttcttctgcaaggaaaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gagaaaggagaaaaaggaaagaaaggaactagaacaaaaatttttcttctgcaaggaaaa 29
Query: 394 tctttccatccagagattagggatatag 421
||||||||||||||||||||||||||||
Sbjct: 28 tctttccatccagagattagggatatag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
