BAC Information

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BAC

Clone NameMSMg01-481N16
Chromosome7 (Build37)
Map Location 30,875,785 - 30,876,349
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566
Downstream geneZfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481N16.T7 (MSMg01no481_n16.b1)MSMg01-481N16.TJ (MSMg01no481_n16.g1)
ACCAG562162AG562163
length736750
length of high quality
(start - end)		620 (45 - 664)616 (74 - 689)
definitionCHROMAT_FILE: MSMg01no481_n16.b1 PHD_FILE: MSMg01no481_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:37 2005CHROMAT_FILE: MSMg01no481_n16.g1 PHD_FILE: MSMg01no481_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGACTATGCGGTTGCATCGACCCCCCGGTGTGGCACCCTGGACG
CCACTGGAGACCGAGGAATCATAACAAGGGCCCTGATCCTTAGGAGTGTT
TCCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAGTATG
CCTGTCCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCCTCTCCCGGC
CCTCCACACCCTATTGGTACAGTATGACCGGGGCAAACATAGAAGTCATA
CAGTCTTGTCCTTTTTCTTCCCCCGGGAGAGCGGCAACCATCTCCATCTG
GGTCATCCCAGTAGTCTCCTACTAAATCACACAGGTCAAAATATAGTTTA
GGGAAGGTGTCTGTCATCGTCCCCAGGAGGGAGGTGGCGTTAGCTGTTTG
TCCTGTCATTAGGTTGGTAACTCTCCAAGTAACATTGAAGACCTGGTGAG
GGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACTAAGATCCCCATAACT
ATCAGGGGGCCCCACGGGTTAATCTTATCTTTAAGGGATTTTGAGAACGC
TGGACCTTCCATGCTGTTCCGGCCGGAGGAGTTGTCGCCGCCTTTACGTG
AGCGGCGTGTATCCACGCAGAGATGCCGTCTACTTTGAGAGCGGTGGGGG
TGGTCAGCANGACGGTGTAGGGTCCTTTCCAGCGGG

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTCCTCTGGAAGAGAAGCCAGTGCT
CTTAACCGCTGAGTCATCTCTCTAGCCCCAACTTTAATGTCTTTTTCAGA
CCAACTGATTTGTTATCTCCTGGACTAGGTATATTTATTGGTTATGGAAA
TCACTTCAAAGGAAGATGCTTTCTCCAAGTGTTCCACTGTAGTTTTTAAT
GTAACTACCTCTCAGTAGCCAGGGATGACCCTGATCCTCCTGCTCCTCCT
GCGGGCTAGCATTAGAAGCATGTGGGAATCCAAGGTGTGGTCCTGGTATC
CACCCTTTCAACCTACAGGACCTGCTAATGAGTACCAAGCCAAATGCATG
TCCAGAACAAGTCACACATCTGCGGAGGAGATCTGTTCCTGCACACTTCT
GGGGCGGGGGGAAACTCGGCCGCTAGAGGTGGCCAAGCAAAGGCTTAGCT
CTCTGAGGAATTGAGATAACTTTCCCCCTTCAATATATTTTTTTTCGTAT
TGCACTGAATTATATTACTAGAAGTCTCAGCCGCATGATTATGCTTACTA
TGCAAATCACACTCCGCCCCCTACCAGTTCTCCGCCCCTTTCCTGATGCA
GTCTATCCTCTACAGATAATACCAAAAGTCCGGGAAATCAGCAGATTCCT
AACTTTTTTGAATGATTTTAAATGCAGTAGTGGAAGCTGATATAGGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_n16.g1 MSMg01no481_n16.g1 CHROMAT_FILE:
MSMg01no481_n16.g1 PHD_FILE: MSMg01no481_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:37 2005
         (616 letters)



>mm_chr7_30875334_30876349
          Length = 1016

 Score = 1069 bits (553), Expect = 0.0
 Identities = 562/565 (99%)
 Strand = Plus / Minus

                                                                        
Query: 52   gccccaactttaatgtctttttcagaccaactgatttgttatctcctggactaggtatat 111
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1016 gccccaactttaatgtctttttcagaccgactgacttgttatctcctggactaggtatat 957

                                                                        
Query: 112  ttattggttatggaaatcacttcaaaggaagatgctttctccaagtgttccactgtagtt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ttattggttatggaaatcacttcaaaggaagatgctttctccaagtgttccactgtagtt 897

                                                                        
Query: 172  tttaatgtaactacctctcagtagccagggatgaccctgatcctcctgctcctcctgcgg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  tttaatgtaactacctctcagtagccagggatgaccctgatcctcctgctcctcctgcgg 837

                                                                        
Query: 232  gctagcattagaagcatgtgggaatccaaggtgtggtcctggtatccaccctttcaacct 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  gctagcattagaagcatgtgggaatccaaggtgtggtcctggtatccaccctttcaacct 777

                                                                        
Query: 292  acaggacctgctaatgagtaccaagccaaatgcatgtccagaacaagtcacacatctgcg 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  acaggacctgctaatgagtaccaagccaaatgcatgtccagaacaagtcacacatctgcg 717

                                                                        
Query: 352  gaggagatctgttcctgcacacttctggggcggggggaaactcggccgctagaggtggcc 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  gaggagatctgttcctgcacacttctggggcggggggaaactcggccgctagaggtggcc 657

                                                                        
Query: 412  aagcaaaggcttagctctctgaggaattgagataactttcccccttcaatatattttttt 471
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 656  aagcaaaggcttagctctctgagaaattgagataactttcccccttcaatatattttttt 597

                                                                        
Query: 472  tcgtattgcactgaattatattactagaagtctcagccgcatgattatgcttactatgca 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  tcgtattgcactgaattatattactagaagtctcagccgcatgattatgcttactatgca 537

                                                                        
Query: 532  aatcacactccgccccctaccagttctccgcccctttcctgatgcagtctatcctctaca 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  aatcacactccgccccctaccagttctccgcccctttcctgatgcagtctatcctctaca 477

                                     
Query: 592  gataataccaaaagtccgggaaatc 616
            |||||||||||||||||||||||||
Sbjct: 476  gataataccaaaagtccgggaaatc 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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