BAC Information

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BAC

Clone NameMSMg01-482E02
Chromosome7 (Build37)
Map Location 93,132,090 - 93,132,709
singlet/doubletsinglet
Overlap genenone
Upstream geneF830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980
Downstream geneLOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482E02.T7 (MSMg01no482_e02.b1)MSMg01-482E02.TJ (MSMg01no482_e02.g1)
ACCAG562464AG562465
length746692
length of high quality
(start - end)
697 (50 - 746)614 (77 - 690)
definitionCHROMAT_FILE: MSMg01no482_e02.b1 PHD_FILE: MSMg01no482_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:07 2005CHROMAT_FILE: MSMg01no482_e02.g1 PHD_FILE: MSMg01no482_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCAATTTCCTTCTAATATGCAATGCAGCCTGCTAAAGAAA
TGCTGTGGGCACATTTAATAAACATTAACTAAAATGGGCAGCTAATATTT
AATTACCATTGATTATAATTGATAACAACTATAAAAGCCTTCTTTATTTT
CTGCAAAGCCTTTTATAGTATAACTAAAACCCTAAGTATTAGAAAGATAT
TGCCTCTGAATATTTTCTGGAGCAACAGCTACTCTACAGGACTTAAAAGC
TCCCTGTGTGAAATCAAGGATTTAAAGTAAACTTCCCTTGAGAGTCATTA
GATAATAAAATACTTTCCACTTAGAAAAGAATATACACTGATTCAAACTC
TTAGCTTCTTGTATTAAAGGAGAGACTATCAGAATTTTTCTACATGAGGT
GAAGCTATTTAAGCCACACCTAGAGGCAAAAATTTCCAGTGATTACAAGC
TCACTAGAAGCAAACCCATTACAATTTATCCAGACACAAAAGAAAAAAGC
AAACTTCTAAATCTATAATAACTTTATATAAAGTAGGCATGTCAAATCGC
AAAGTCCTGATAAATTCGACAGTCTGATTGACCTTTTATAAACTTAGAAA
AGACTCCCGAGTTGCCAATTTAAGGCTAGCCTTCTGTTACCAATGTGGCA
ATTATTTAATCCTAACCAATAACTTATGAGCTGATAATCTTGTGAA
CTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCACTTTCCTGAAAGGAGAAA
CACACAAATCTTCCTGGAAGAAGTTTAGACCAGAGTTCTTTGGAAATTAC
ATGCTGTCTCTAAACTTTTAAGTGCACTGAAGGTTGTGCACTGTATTACA
TTCCCATTTTTGTGTGGTTATTTTCATGCTGGATTGTTATGGTGTGAGTG
TTTTCTGATTCTGTAAGTAACTGCTCACTAATATTGTGGTGAGCAAAAAC
AATAAAACATACTGGTTCACAATATTGGACATTTTTGGAGTTCCCTATCA
GGAGTTAATATATAGGTATGTTGCATGTACCCAAGAGGACTTTTATAATT
GAACATCCTCAAAATTTTATGAAAGGATTTGGAAACTTAACTCCATATCA
GATCCTTAACATCATTCTACGCCATAAAGTTGCAAAAATAAATAGATAGG
TCTTTCTTATAATATAGGCATACATTGATTAATGGGTTTTCCTAAAGATA
CATTCTCCAACTGGATATGACCATGTCTGCAATTTCACTGAGAATTATTC
CTGTCACAATTTCCATTAAAGAGCCCAATGACTTTCTTTACTGGTGTAGA
CTTCTTAAATCATGAATTATTAAAATATTTTAAACCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_e02.g1 MSMg01no482_e02.g1 CHROMAT_FILE:
MSMg01no482_e02.g1 PHD_FILE: MSMg01no482_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:08 2005
         (614 letters)



>mm_chr7_93131896_93132909
          Length = 1014

 Score = 1087 bits (562), Expect = 0.0
 Identities = 603/620 (97%), Gaps = 6/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccactttcctgaaaggagaaacacacaaatcttcctggaagaagtttagaccagagt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ataccactttcctggaaggagaaacacacaaatcttcctggaagaagtttagaccagagt 254

                                                                       
Query: 61  tctttggaaattacatgctgtctctaaacttttaagtgcactgaaggttgtgcactgtat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 tctttggaaattacatgctgtctctaaacttttaagtgcactgaaggttgtgcaatgtat 314

                                                                       
Query: 121 tacattcccatttttgtgtggttattttcatgctggattgttatggtgtgagtgttttct 180
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 315 tacattcccatttttgtgtggttattttcatgttgggttgttatggtgtgagtgttttct 374

                                                                       
Query: 181 gattctgtaagtaactgctcactaatattgtggtgagcaaaaacaataaaacatactggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gattctgtaagtaactgctcactaatattgtggtgagcaaaaacaataaaacatactggt 434

                                                                       
Query: 241 tcacaatattggacatttttggagttccctatcaggagtta------atatataggtatg 294
           |||||||||||||||||||||||||||||||||||||||||      ||||||| |||||
Sbjct: 435 tcacaatattggacatttttggagttccctatcaggagttaatatatatatatatgtatg 494

                                                                       
Query: 295 ttgcatgtacccaagaggacttttataattgaacatcctcaaaattttatgaaaggattt 354
           |||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 495 ttgcatgtacccaagaagacttttataattgaacatcctcaagattgtatgaaaggattt 554

                                                                       
Query: 355 ggaaacttaactccatatcagatccttaacatcattctacgccataaagttgcaaaaata 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaaacttaactccatatcagatccttaacatcattctacgccataaagttgcaaaaata 614

                                                                       
Query: 415 aatagataggtctttcttataatataggcatacattgattaatgggttttcctaaagata 474
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 aatagataggtctttcttataatataggcatacattgattaatgtgttttcctaaagata 674

                                                                       
Query: 475 cattctccaactggatatgaccatgtctgcaatttcactgagaattattcctgtcacaat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cattctccaactggatatgaccatgtctgcaatttcactgagaattattcctgtcacaat 734

                                                                       
Query: 535 ttccattaaagagcccaatgactttctttactggtgtagacttcttaaatcatgaattat 594
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttccattaaagagtccaatgactttctttactggtgtagacttcttaaatcatgaattat 794

                               
Query: 595 taaaatattttaaacctatt 614
           || |||||||||||||||||
Sbjct: 795 tataatattttaaacctatt 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)