BAC Information

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BAC

Clone NameMSMg01-482F02
Chromosome7 (Build37)
Map Location 11,048,885 - 11,049,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10
Downstream geneZik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482F02.T7 (MSMg01no482_f02.b1)MSMg01-482F02.TJ (MSMg01no482_f02.g1)
ACCAG562512AG562513
length713724
length of high quality
(start - end)
659 (36 - 694)372 (77 - 448)
definitionCHROMAT_FILE: MSMg01no482_f02.b1 PHD_FILE: MSMg01no482_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:12 2005CHROMAT_FILE: MSMg01no482_f02.g1 PHD_FILE: MSMg01no482_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTACCTCTGAGCCCCATATTTTAATGGGGGTTATTTGATTTTCTGGAGTC
CACCTTCTTGAGTTATTTATATATATTGGATATTAGTCCCCTATCTGATT
TAGAATACATAAAATTCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGATGGTCTTTTGACTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATT
TGTAGACTCTCGATCTTATAGCACTATCCATTGCTGTTCTATTCAGGAAA
TTTTCCCCTGTACCCATATGTTCGAGGGTTTTCCCTACTTTCTCCTCTAT
AAGTTTCAATGTCTCTGGTTTTATGTGGAGTTCCTTAATCCTCTCAGATT
TGACCTTAGTACAGGGAGATAGGAATGGATCAATTTGCATTCTTCTACAT
GATAACTGCCAGTTGTGCCAGCACCATTTGTTGAATATGCTGTCTTTTTT
CCACTGGATGGTTTTTGCTCCCTTGTCAAATATCAAGTGACCATAGGTGT
GTGGGGTCATTTCTGGGTCTTCAGTTCTAGTCCATTGGTCTACTTGTCTG
TCGCTATATCAGTACCATGCAGTTTTTAATCACAATTTTTCTGTAGTACA
GCTTTAGGTCAGGCATGGTGATTCTACCAGATGTTCTTTTTTCCTTGAGG
AGAGTTTTTGCTN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAATGGGTGACAGGGCAGCTGTC
ATGTCAGACCACAGTTAGAACACTTTATTTTATTAAAATCTCAAAAGCCT
TATTTGCACTTAAAATTTGCCTATGAAATAGACCTATATTTGAAAATGAA
AGTTATTTTTTAAAATATTTATTTGTCTACTATAATTTTGTGTGCATGAA
TATTTTGCCTCTGTGTGTGTCTGTGTGTGTGGTGTGTGTTTGCGCATGCA
CACATGTACATAAGCACTATGAAGAAAGAAAAAGAAAAAAAAAAGGAAGG
AAGGTAGGAAGAGAAGGAGGAAGGAAGGGAAGAAGGAATGATGGAAGAAA
GAAAGGAAAGAGAGATGAGGAAGGGAGGAAAGAAGGGAGGGGGAAGGTAA
TATTTTTTTTCCCCCCGTTGCGTCCTCTTCCTCTTTGTTTTTTTTTTCCC
CCCTTGTTTTTCCCTCCTCNTCTGTTCCCTCCTTTACCTCTCTTTTTTCT
TGCTCTTCGTCTTTTTCTTATCCTTTTTACTCTGTGTTTATTCTTCTTTT
TTTCCCCCATTTTTTTTATCTTTCTCACCCCTCATTCACCTCCATCCTCA
GTTCCGCTTTTTCGTGCTCCTTATTCTTTTTTATCTTCCTCTTTATTACT
ATTCCCTATTTTTAAACTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_f02.g1 MSMg01no482_f02.g1 CHROMAT_FILE:
MSMg01no482_f02.g1 PHD_FILE: MSMg01no482_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:12 2005
         (372 letters)



>mm_chr7_11048685_11049456
          Length = 772

 Score =  710 bits (367), Expect = 0.0
 Identities = 370/371 (99%), Gaps = 1/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgggtgacagggcagctgtcatgtcagaccacagttagaacactttattttattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatgggtgacagggcagctgtcatgtcagaccacagttagaacactttattttattaa 260

                                                                       
Query: 61  aatctcaaaagccttatttgcacttaaaatttgcctatgaaatagacctatatttgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcaaaagccttatttgcacttaaaatttgcctatgaaatagacctatatttgaaaa 320

                                                                       
Query: 121 tgaaagttattttttaaaatatttatttgtctactataattttgtgtgcatgaatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagttattttttaaaatatttatttgtctactataattttgtgtgcatgaatatttt 380

                                                                       
Query: 181 gcctctgtgtgtgtctgtgtgtgtggtgtgtgtttgcgcatgcacacatgtacataagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctctgtgtgtgtctgtgtgtgtggtgtgtgtttgcgcatgcacacatgtacataagca 440

                                                                       
Query: 241 ctatgaagaaagaaaaagaaaaaaaaaaggaaggaaggtaggaagagaaggaggaaggaa 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgaagaaagaaaaagaaaaaaaaa-ggaaggaaggtaggaagagaaggaggaaggaa 499

                                                                       
Query: 301 gggaagaaggaatgatggaagaaagaaaggaaagagagatgaggaagggaggaaagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggaagaaggaatgatggaagaaagaaaggaaagagagatgaggaagggaggaaagaagg 559

                      
Query: 361 gagggggaagg 371
           |||||||||||
Sbjct: 560 gagggggaagg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)