BAC Information

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BAC

Clone NameMSMg01-482L05
Chromosome7 (Build37)
Map Location 59,549,028 - 59,549,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482L05.T7 (MSMg01no482_l05.b1)MSMg01-482L05.TJ (MSMg01no482_l05.g1)
ACCAG562803AG562804
length695727
length of high quality
(start - end)
609 (61 - 669)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no482_l05.b1 PHD_FILE: MSMg01no482_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:40 2005CHROMAT_FILE: MSMg01no482_l05.g1 PHD_FILE: MSMg01no482_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGGTTC
CCAAACTTAGTCAACAAACTACAGGCAGCTGTGGAAAGTAGAGAGCTGGG
CCACATGTCACCCCAATGGAGTGACTCCAAGTTAGTTCAGCCTAGAGCTC
ATATATCTACACTGTATGGACTGAACAAGCTGTGTTTATGTATTTAAGAA
TATATAACAACAGTAAAAGACAAAGAAGCCATGAATTTGAGAGTAATCAA
ACTAGAAAGGGTTCATGGTTGGATTAGAATATGGAAGGTGAAGGTGGTGA
TAATGTAATTTTAATTGAAAAAATATATAAAATATCCACAAGTTGAGGAT
GTCAGTCCTCATTTTAAATTCAATACTTGAATGAAAATGAAGACTTGATT
AGCTGACTTTATTTTGGAATTCAAATAAACCTGAGTATTCACATGTCTTT
GGGAATACAATCACTGAACAGTAGTTAAAGATTTTCTGAATGTAGTGACC
ATGGAAAGATCTCCTGGGAAACATTCTTATCCATCCTGGAAAGCAGGACC
CATGCTTCAAACCTAGGGGTGCCCACGAGCATTCAAAGCAGAATGAAGAC
ACTCTATAAAGACATGCCGTGCCCTGAAATGAGTGAAGACAGCTTGGGTA
GTCTCCATAAAACTCTAACATATCAGAGAACACTTTACATGAGAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAAGATTAAGACAGGGAGATCTCAGA
GTTCAAGGTCATCTGGGATTAAAGGCATTGTGGCACACACCTTTAATCTG
GGCTACACCTTCTGCTGGAAACTTATATAAGGACGTTGGACGAAGGAAGA
CTCTCTCTCTCTATCCTTTGCCTGCTTGCCATGTGGAAATTCTTGGACTT
CCATTCACAGTTGTTGCTGACCATTGTTGAGAGTTCTGCAGACTGTAAGT
TATCAACAAATTCCTTTACTATATAGATACTCTAGAATCCAAAATAAATT
CAAGACCACTCAGCCCCTTGCCCCTCTGAAGGGACTTTCCAAACTATACT
AGCAGGCCAAGTGCACACCCCCACAAGGAAGCTGGATGACTAAACAATAC
TGAGAAAAAACCATCAGGGCAGGCAGAGTGAGGGACTAGGCCAAAGGTAG
TCACCCTATGCAAACCAACCAATGACTGAAAGGGTTACTTGCTACACCAA
TTAGAATAAGCCAGCCAGCCTTGTTGCCTAAATCTGCCCCTTACAAGGTA
TAAAAAGTGTGTTTGTTTTTTGTTCCGGGTCTCTCTTTGCCTGTGTGCTG
GGGTGGGGTGGGGTCCCCAATGCCTTGGATCAATAAAAAAAAAAAAAATC
TTTCCGTTTGCAACAATGTCTGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_l05.b1 MSMg01no482_l05.b1 CHROMAT_FILE:
MSMg01no482_l05.b1 PHD_FILE: MSMg01no482_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:40 2005
         (609 letters)



>mm_chr7_59548553_59549561
          Length = 1009

 Score = 1009 bits (522), Expect = 0.0
 Identities = 531/534 (99%)
 Strand = Plus / Minus

                                                                        
Query: 75   gttcagcctagagctcatatatctacactgtatggactgaacaagctgtgtttatgtatt 134
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gttcagcctagagctcatatatgtacactgtatggactgaacaagctgtgtttatgtatt 950

                                                                        
Query: 135  taagaatatataacaacagtaaaagacaaagaagccatgaatttgagagtaatcaaacta 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  taagaatatataacaacagtaaaagacaaagaagccatgaatttgagagtaatcaaacta 890

                                                                        
Query: 195  gaaagggttcatggttggattagaatatggaaggtgaaggtggtgataatgtaattttaa 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  gaaagggttcatggttggattagaatatggaaggtgaaggtggtgataatgtaattttaa 830

                                                                        
Query: 255  ttgaaaaaatatataaaatatccacaagttgaggatgtcagtcctcattttaaattcaat 314
            |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 829  ttgaaaaaatatataaaacatccacaagttgaggatgtcattcctcattttaaattcaat 770

                                                                        
Query: 315  acttgaatgaaaatgaagacttgattagctgactttattttggaattcaaataaacctga 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  acttgaatgaaaatgaagacttgattagctgactttattttggaattcaaataaacctga 710

                                                                        
Query: 375  gtattcacatgtctttgggaatacaatcactgaacagtagttaaagattttctgaatgta 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  gtattcacatgtctttgggaatacaatcactgaacagtagttaaagattttctgaatgta 650

                                                                        
Query: 435  gtgaccatggaaagatctcctgggaaacattcttatccatcctggaaagcaggacccatg 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  gtgaccatggaaagatctcctgggaaacattcttatccatcctggaaagcaggacccatg 590

                                                                        
Query: 495  cttcaaacctaggggtgcccacgagcattcaaagcagaatgaagacactctataaagaca 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  cttcaaacctaggggtgcccacgagcattcaaagcagaatgaagacactctataaagaca 530

                                                                  
Query: 555  tgccgtgccctgaaatgagtgaagacagcttgggtagtctccataaaactctaa 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tgccgtgccctgaaatgagtgaagacagcttgggtagtctccataaaactctaa 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)