BAC Information

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BAC

Clone NameMSMg01-483I01
Chromosome7 (Build37)
Map Location 5,342,963 - 5,343,620
singlet/doubletsinglet
Overlap genenone
Upstream geneGp6, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
Downstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483I01.T7 (MSMg01no483_i01.b1)MSMg01-483I01.TJ (MSMg01no483_i01.g1)
ACCAG563416AG563417
length741745
length of high quality
(start - end)
658 (80 - 737)608 (82 - 689)
definitionCHROMAT_FILE: MSMg01no483_i01.b1 PHD_FILE: MSMg01no483_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:44 2005CHROMAT_FILE: MSMg01no483_i01.g1 PHD_FILE: MSMg01no483_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAAAGAGG
ATCCGCGGAATTCCTTCTTTCTTTGAGTTGCTGTTGCCATTTTATACTGG
CTTTTAGTCTTTCTGTAATTTAATAACAAGTTATCTCTTCAGTTTTGCAT
AAATCACTTATGTTTTTAAAAACTTCAAGTTGGGTATTGTGGCACATACC
TTTAATCCTAGTGATTGGGAGACAGAGGTAAGCAGATCTTTGTGAGTTCA
AAGGCCATATTGGTCTACATAAACTAGTTCTAGGCCAGCCAGGCCTCCAT
GTCTCAAAACAAAAACTGAATATTTTTTCTAAAATGTATTCTCTTGTTTT
AGAGTTTGACTATGATGCTTTCTATATGACAGTACAAGAGCGAGTAAATG
AGAAACTCAAAGTACACATGCCAGTTATGCATAAGGTATGGTACCATGGT
GCACATGGAGAGGCCAGAGGACGCTTTGTGGTGTTCTTATTTGTGTCTGT
GTTCTAGGGATTGAATTCATGTTATCAGGCTACATTGCAAGCACTTTTAC
CCTGAGCCATCTTACGTACTACCCCCAAATTATTTTATTTTATTTTTATT
TTTTTATGTTCTTTAACCTTCTATTTACTTCCCAAGAATAAAATCCTATG
ATATATTTACATTTTTTTCATGCATGGCCTTGTTTCCTGCAAAATTTACT
TATTCAAAATCAATGGCAGTCAACAAATATTAAATAGAAAA
AAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAA
TGGCAGTGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACTCTGAGATTCCACCTCACACCGGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCGTCCATTGTTGGTGGGATTGCAGGCATGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATACCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGGAAATGTGGTACATCTACCCAATGGAGTACTACTCAGCTATTAAAAAG
AATTAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACAATCACAAAGGTGCTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGAGAC
AATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_i01.b1 MSMg01no483_i01.b1 CHROMAT_FILE:
MSMg01no483_i01.b1 PHD_FILE: MSMg01no483_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:44 2005
         (658 letters)



>mm_chr7_5342763_5343820
          Length = 1058

 Score = 1172 bits (606), Expect = 0.0
 Identities = 645/658 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgttgccattttatactggcttttagtctttctgtaatttaataacaagttatctctt 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 201 gctgttgccattttatactggcttttagtctttctgtaatttaagaagaagttatctctt 260

                                                                       
Query: 61  cagttttgcataaatcacttatgtttttaaaaacttcaagttgggtattgtggcacatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttttgcataaatcacttatgtttttaaaaacttcaagttgggtattgtggcacatac 320

                                                                       
Query: 121 ctttaatcctagtgattgggagacagaggtaagcagatctttgtgagttcaaaggccata 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctttaatcctagtgcttgggagacagaggtaagcagatctttgtgagttcaaaggccaga 380

                                                                       
Query: 181 ttggtctacataaactagttctaggccagccaggcctccatgtctcaaaacaaaaactga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtctacacaaactagttctaggccagccaggcctccatgtctcaaaacaaaaactga 440

                                                                       
Query: 241 atattttttctaaaatgtattctcttgttttagagtttgactatgatgctttctatatga 300
           ||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 441 atactttctctaaaatgtattctcttgttttagagtttgactataaggctttctatatga 500

                                                                       
Query: 301 cagtacaagagcgagtaaatgagaaactcaaagtacacatgccagttatgcataaggtat 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cagtacaagagcgagtaaatgagaaactcaaagtacacatggcagttatgcataaggtat 560

                                                                       
Query: 361 ggtaccatggtgcacatggagaggccagaggacgctttgtggtgttcttatttgtgtctg 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgccatggtgcacatggagaggccagaggacgctttgtggtgttcttatttgtgtctg 620

                                                                       
Query: 421 tgttctagggattgaattcatgttatcaggctacattgcaagcacttttaccctgagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttctagggattgaattcatgttatcaggctacattgcaagcacttttaccctgagcca 680

                                                                       
Query: 481 tcttacgtactacccccaaattattttattttatttttatttttttatgttctttaacct 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttacgtactccccccaaattattttattttatttttatttttttatgttctttaacct 740

                                                                       
Query: 541 tctatttacttcccaagaataaaatcctatgatatatttacatttttttcatgcatggcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctatttacttcccaagaataaaatcctatgatatatttacatttttttcatgcatggcc 800

                                                                     
Query: 601 ttgtttcctgcaaaatttacttattcaaaatcaatggcagtcaacaaatattaaatag 658
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 ttgtttcctgcaaaatttacttattcaaaatcaatggcagccaacaaatattaaatag 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)