BAC Information

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BAC

Clone NameMSMg01-483J18
Chromosome7 (Build37)
Map Location 96,407,662 - 96,613,091
singlet/doubletdoublet
Overlap geneTmem135, LOC100039969, Fzd4
Upstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream genePrss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483J18.T7 (MSMg01no483_j18.b1)MSMg01-483J18.TJ (MSMg01no483_j18.g1)
ACCAG563498AG563499
length763769
length of high quality
(start - end)		502 (72 - 573)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no483_j18.b1 PHD_FILE: MSMg01no483_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:52 2005CHROMAT_FILE: MSMg01no483_j18.g1 PHD_FILE: MSMg01no483_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,612,590 - 96,613,091)(96,407,662 - 96,408,179)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACATGTTCTAAAAACCCTGCAGGGCAGCACGTGTGTGGGGA
AGGCAGCCTCATTGGCGGAGCTGCATGCAGGAAGCAGATGGTCTTCTGCA
TTCTGAGAGGTTGTTGATCACTCTTGAGATTTTGTTGAAAGGTTGCTCAA
TCATTTCTGAGCTACAACCCTCAATACTTAGTGGCAAGCCCCATCTGAGG
TCCTGGTAGTGGGCTTTTGTGTCTAGACCACAGGAATTCTATCCTCAGTC
TCCAACATGAGGGTGTTTGATTTTGAGAAGGTAGCTTCATGCTGACAGCA
CAGCTACCAGCCAGATGCTTCAAAGCAGGAGGATCCAACTGAATGACTTC
AGAAGGAAGAGCCCACCAACTCGTCATACTGCCTAGCAGATGGCAGGTTT
GCACTTGCGGAGCATTTGCTGCCAGGATGAAGTCATGTCTTTTGCAGTTA
CTGCCTCGTTATTTTTAATGGATGTTGATGCAGTACACCTTACAAAGACC
TGGGGATGTGCCTGGCCCAAATCCTTCAGAGGGGATCTTTTTGAANGATT
AAAGGAAGTGGAAATGATGCTTTCTGCCCATCTCTGTTTACTGCTAGTAG
AAGCTAAGAGGGCTTTGACAGTCCCTCTGTTACTCCACCTCCTGTCTAAT
TAGTGGATGTCAAAAGAGGGGACCGCAAGTTCACCCCTTGGCTTGGAAAT
AAGGACCTCTGTT

NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTTCCACATACAGAAAA
AAATAGAATTTTACATTCCAGACTACAGTAAGGAATGCACTTATGCCATA
TATAAACACACATGTGCATGGGATATATACATCACTGACTAGAAGAGAGG
AAAACCATATCACGGAAGGAACATTTATTTCTTTAAGACTAACAACTGGC
AAGTAAATTTAAAGTCTCTTTTTTAAACCACTGATTTAAATGCTAAAGGA
ACAAAACTTACATTTCATCTATATTAGTAAAATACATATATCAGTTAGAC
CAGTAGGTAAATGCAGACACACCTGAGGCCTAAATTCAGTCCTGGGACCA
CATAGTAGAAGCACAAAACTGACTCCTGCAAGCTGCTCCCCATCTCCATA
TGCACACAGTAGCAGCATGTATGCATTGCACAGACACATACACACAAATA
TAAACAGAGATGAGATAAAAAGTTTCAAATGACAAACTCTGTACCAATAA
ATTTAAAGCTGATAAACTTTTAAGATATGTCATACCATTCTCTCAAATCT
TCTCGAATAAGACTCAAACATTTTCATCATGAATTTAAATATGGCAGGCT
TTACCTTTTTTATGATNCACTGAAATTGCTACGTGATAAAACTTTGACAC
TATGAAAAATTTGAAAAAAAAAAGTAAAATTTTCTAATAATCANTACTTC
CGAAAAATGATCCCAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_j18.b1 MSMg01no483_j18.b1 CHROMAT_FILE:
MSMg01no483_j18.b1 PHD_FILE: MSMg01no483_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:52 2005
         (502 letters)



>mm_chr7_96612390_96613291
          Length = 902

 Score =  924 bits (478), Expect = 0.0
 Identities = 496/502 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccctgcagggcagcacgtgtgtggggaaggcagcctcattggcggagctgcatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aaccctgcagggcagcacgtgtgtggggaaggcagcctcattggcggagctgcatgcagg 643

                                                                       
Query: 61  aagcagatggtcttctgcattctgagaggttgttgatcactcttgagattttgttgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aagcagatggtcttctgcattctgagaggttgttgatcactcttgagattttgttgaaag 583

                                                                       
Query: 121 gttgctcaatcatttctgagctacaaccctcaatacttagtggcaagccccatctgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gttgctcaatcatttctgagctacaaccctcaatacttagtggcaagccccatctgaggt 523

                                                                       
Query: 181 cctggtagtgggcttttgtgtctagaccacaggaattctatcctcagtctccaacatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cctggtagtgggcttttgtgtctagaccacaggaattctatcctcagtctccaacatgag 463

                                                                       
Query: 241 ggtgtttgattttgagaaggtagcttcatgctgacagcacagctaccagccagatgcttc 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggtgtttgaaattgagaaggtagcttcatgctgacagcacagctaccagccagatgcttc 403

                                                                       
Query: 301 aaagcaggaggatccaactgaatgacttcagaaggaagagcccaccaactcgtcatactg 360
           |||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||
Sbjct: 402 aaagcaggaggatccaactgaatgacttcagaaggaagagcgtattaactcgtcatactg 343

                                                                       
Query: 361 cctagcagatggcaggtttgcacttgcggagcatttgctgccaggatgaagtcatgtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctagcagatggcaggtttgcacttgcggagcatttgctgccaggatgaagtcatgtctt 283

                                                                       
Query: 421 ttgcagttactgcctcgttatttttaatggatgttgatgcagtacaccttacaaagacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttgcagttactgcctcgttatttttaatggatgttgatgcagtacaccttacaaagacct 223

                                 
Query: 481 ggggatgtgcctggcccaaatc 502
           ||||||||||||||||||||||
Sbjct: 222 ggggatgtgcctggcccaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_j18.g1 MSMg01no483_j18.g1 CHROMAT_FILE:
MSMg01no483_j18.g1 PHD_FILE: MSMg01no483_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:52 2005
         (518 letters)



>mm_chr7_96407462_96408379
          Length = 918

 Score =  994 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcatttccacatacagaaaaaaatagaattttacattccagactacagtaaggaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcatttccacatacagaaaaaaatagaattttacattccagactacagtaaggaatgc 260

                                                                       
Query: 61  acttatgccatatataaacacacatgtgcatgggatatatacatcactgactagaagaga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttatgccatatataaacacacgtgtgcatgggatatatacatcactgactagaagaga 320

                                                                       
Query: 121 ggaaaaccatatcacggaaggaacatttatttctttaagactaacaactggcaagtaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaaccatatcacggaaggaacatttatttctttaagactaacaactggcaagtaaat 380

                                                                       
Query: 181 ttaaagtctcttttttaaaccactgatttaaatgctaaaggaacaaaacttacatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagtctcttttttaaaccactgatttaaatgctaaaggaacaaaacttacatttcat 440

                                                                       
Query: 241 ctatattagtaaaatacatatatcagttagaccagtaggtaaatgcagacacacctgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatattagtaaaatacatatatcagttagaccagtaggtaaatgcagacacacctgagg 500

                                                                       
Query: 301 cctaaattcagtcctgggaccacatagtagaagcacaaaactgactcctgcaagctgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctaaattcagtcctgggaccacatagtagaagcacaaaactgactcctgcaagctgctc 560

                                                                       
Query: 361 cccatctccatatgcacacagtagcagcatgtatgcattgcacagacacatacacacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccatctccatatgcacacagtagcagcatgtatgcattgcacagacacatacacacaaa 620

                                                                       
Query: 421 tataaacagagatgagataaaaagtttcaaatgacaaactctgtaccaataaatttaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaacagagatgagataaaaagtttcaaatgacaaactctgtaccaataaatttaaag 680

                                                 
Query: 481 ctgataaacttttaagatatgtcataccattctctcaa 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgataaacttttaagatatgtcataccattctctcaa 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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