BAC Information

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BAC

Clone NameMSMg01-484C17
Chromosome7 (Build37)
Map Location 101,549,251 - 101,549,768
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666783, EG638305, EG545982
Downstream geneEG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484C17.T7 (MSMg01no484_c17.b1)MSMg01-484C17.TJ (MSMg01no484_c17.g1)
ACCAG563922AG563923
length1,083758
length of high quality
(start - end)
---634 (76 - 709)
definitionCHROMAT_FILE: MSMg01no484_c17.b1 PHD_FILE: MSMg01no484_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:38 2005CHROMAT_FILE: MSMg01no484_c17.g1 PHD_FILE: MSMg01no484_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCTGGTGTTGGCTGGCGCGCGGCCGTTGCGACAAGCAATCTCCCCCCC
TCTATTATTATTCTGTTTTTTTTAACTCTTTTTCACCCCCCTTGTCCCGC
AGGCCGTGTATTATAATAAACCGCAAAAAAACCCCANCCCACCCTTTTCG
TCTATAATCATTTAGTCATACATAAATATCCCTTATCCGCCCGAAAAAGA
TGAGAAACGGGTTAGGATGGGGGAAGCGCTCGAGAGGCATAGCTGTCCGG
TTAATCACGACGATTGTCTATTTTTCCCCTCCAATTTAATACGAGCAAGA
CCGCGCCCAACTATAAACAAATTAATTAAAGTATCAAGCGATTTATAGGC
CGCGGTTTTTTTTGACATAGACGCGCGGTAAAAGCCCGAATATTTTTGTT
AGCCGCGATTTTATTACCGTCCGGTACTTTCATTCTCTTTACCATTTTTT
CCCCTATTTCGTTATCCTCCCGACCTTTTTTTTTGGTTGCCTCAAGCATC
GCTTTTTGTCCACATCCTATTCGCGTTCCCAGCCGGGGTTGCTACCAGGG
GTANCGCGCTGAAGAGGCGATAGAAAATAAAATATGGCTCGTGTCGGTAC
CCGTGGTCATTTCACACAGCTAGAAAGGGTTGTGTCGCTCTCCGCGTTAA
ATTTATGGGCCACACCGCGCCCAACCGAGAAGCCGTATTGCTATACACCG
CGGGTAGACTTCTCCGACACGAATAGTATCGGGATCGGTGAAGGCAGTGT
GTGACACGTTTTACCCCGTGGCGACAACACACAACAACGCGATTATGTTT
GCTGTGGGCGGAGGAGCACCACCAAGCGCCCAGTGAAAATTAATTTATCT
AATACCCTCTAACTTTGTGCTCACTATATGGCGTAAGTCGTATGCACCCC
TTCGTTTACATTCCGCGGTTATGTATAATGTAGAGTTAAAAACCCCCACC
GTTTTATCACAAACGTCGTACTTATGTGCAATGCTACATGGATTTATTAA
GATGGCCCGCACGCCTCCTATATCTAAATTAATATAGGAGAGGGCGGCGG
CGTGGAACGCGCCCATTAGAGAGCTTAGCCCTG
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGGGTGAATCTGAGGTTTCATCA
CACAAGAAAATAAGTAGCAGATGTACAGTAGAACTGGGATTATAGGAGAA
ATAAGTGCTGCCTTGTCTCTGAGGTGTTTGTATAGGACACATGCTCACAT
ATGCTTAGAATACTTTCCAAAACATTCTTCCTCTTCCTTATCTCTAAAAT
GTTAGCCATGTGAATCTGTAAGCTAGTGGCCTTGGTCACTGTCATGAGTT
GACTAGACAAAGCCTGGAGAAAAGACTCTAGTGAGGGAAAACAAAAAATT
CTACCTTTTAAATTATTTTTCATTGGAAATAAGGGAAGAGGGAAGTATTC
TCAAGTAATTCTCAAAGGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGA
TACTTTGATCCTTCCTAGAAGGGGGAACAAAGTAACCATGGAAGGATTAC
AGAGACAAAGTTTTGAGCAGAGACTGAAGGAATGACCATCCAGAGACTGC
CCCACTGGGGATCCATCCCATAAACAACCACCAAACCCGGACACTATAGT
GGGTGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAACTGTCTCTTGA
GAGGCTCTGCTAGTGCTTGACATATACAGAAGTGTATGCTTACAGCCATC
CATTGGACAGAGCATAGGGGTCCCAATGAGGGAGCTAGAAAAAAGACCAA
GGAGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_c17.g1 MSMg01no484_c17.g1 CHROMAT_FILE:
MSMg01no484_c17.g1 PHD_FILE: MSMg01no484_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:38 2005
         (634 letters)



>mm_chr7_101549251_101550284
          Length = 1034

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gggtgaatctgaggtttcatcacacaagaaaataagtagcagatgtacagtagaactggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gggtgaatctgaggtttcatcacacaagaaaataagtagcagatgtacagtagaactggg 459

                                                                       
Query: 64  attataggagaaataagtgctgccttgtctctgaggtgtttgtataggacacatgctcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attataggagaaataagtgctgccttgtctctgaggtgtttgtataggacacatgctcac 399

                                                                       
Query: 124 atatgcttagaatactttccaaaacattcttcctcttccttatctctaaaatgttagcca 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 398 atatgcttagaatactttccaaaacactcttcctcttccttatctctaaaatgttagcca 339

                                                                       
Query: 184 tgtgaatctgtaagctagtggccttggtcactgtcatgagttgactagacaaagcctgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtgaatctgtaagctagtggccttggtcactgtcatgagttgactagacaaagcctgga 279

                                                                       
Query: 244 gaaaagactctagtgagggaaaacaaaaaattctaccttttaaattatttttcattggaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 278 gaaaagactctagtgagggaaaacaaaaaattctaccttttaaattatttttcgttggaa 219

                                                                       
Query: 304 ataagggaagagggaagtattctcaagtaattctcaaaggaagctcaagaagaaggaaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ataagggaagagggaagtattctcaagtaattctcaaaggaagctcaagaagaaggaaga 159

                                                                       
Query: 364 ccaaagtgtggatactttgatccttcctagaagggggaacaaagtaaccatggaaggatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ccaaagtgtggatactttgatccttcctagaagggggaacaaagtaaccatggaaggatt 99

                                                                       
Query: 424 acagagacaaagttttgagcagagactgaaggaatgaccatccagagactgccccactgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  acagagacaaagttttgagcagagactgaaggaatgaccatccagagactgccccactgg 39

                                                 
Query: 484 ggatccatcccataaacaaccaccaaacccggacacta 521
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  ggatccatcccataaacaaccaccaaacccggacacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)