BAC Information

Click to search

BAC

Clone NameMSMg01-484E08
Chromosome7 (Build37)
Map Location 87,443,919 - 87,606,792
singlet/doubletdoublet
Overlap genePrc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm
Upstream geneAbhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b
Downstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E08.T7 (MSMg01no484_e08.b1)MSMg01-484E08.TJ (MSMg01no484_e08.g1)
ACCAG564000AG564001
length757747
length of high quality
(start - end)		667 (53 - 719)600 (82 - 681)
definitionCHROMAT_FILE: MSMg01no484_e08.b1 PHD_FILE: MSMg01no484_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:46 2005CHROMAT_FILE: MSMg01no484_e08.g1 PHD_FILE: MSMg01no484_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,443,919 - 87,444,582)(87,606,193 - 87,606,792)
sequence
NNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGATACCACCAGTAACCAAAATGCCTCCAGCCCCAC
TTTTTGTGGGACTACTGCAGCAGGTTAAATGGGTTATTCCAAGGCCCGTG
TTAAAGGTGGCATAGACTATCTATTCCAAGCTCCAGTTCTCTAGCAGCAA
AATAGTCTGTTTCCTTCCTTGGTGTATCGAAGAAAAAGGAGGAAACATTC
TGTTCTTAAATGTTATATAAAGGGGATTAATTTTTTTGTTTGTTTTTTGA
GACGGGGCTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGTTCTGTAGA
CTAGATTGGCCTCAAATTCAGAGATCCGATTGCCTCTGCACCCCTAATGC
AGGGATGTAAGGCATGTGCCATTATTGCCTGGCATAGATATTGAAACTTT
TCAAAGATAAAATACTGCTGAGGTTGGTGGCACAGGTGGAAGGAGAACCA
AGGGGCCAAGGTTCAAGGTCATCCTTGTCTCATGGATAGGGATCCAACCC
AGGTTGTTAGTCTTCACACGTTGAGCCATTTGCCAGCCTAGCATGTTTTG
AGCTTTAGCAATGTTGTATGTAATTTGTTCCTTTGCATTGTTGTAATGTA
CTGATCCATTCTGTTGACATACAAGCCATCTCCATTTCCCATGCTATGAC
TAAGTGCTGCTTCTTTCTAGCAACAGTCTGTCTTGGTTTCTTTTTGGTTG
CTCACAN

NNNNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGGCTCTG
TTTTACAGAGAAACCTTGTCTCAAAAAAGACAAAAGAAAGAAGTTAAAAC
AGTATGTGAGTTAGAATCCATAAAAAATGGTAGGTTTTTGGCTATTAATG
TAGTTTCCTAACTGGTCTCCTTAATGTCCTATGTGAGCATGTTGTGCTTT
TACTTTTATGTTTTCCCAGGCCACTAACGCTAGAACAGCTCACTAGACAC
AATACAGAGTCTGTCAAGGGGGTCATAGGGTCTGCATCTGCTTTCTTCTT
CCATTTTGTCTCCCACTAGCCCTCTTGAACCTGCTCTATCCCACAGTCTA
TCACTTTCCTCCAAGCATAAGAGTGACTGGAAAGGATCTGAAATCTACCC
TCTGCTCAAGGCAGAGATATGGGATTAGCACCCTTTCACTCCAAAGCCAA
CGCTCTTGGCTCAGAGCAAACCCAAGCCTTGGTTTCTACCACTGCATCCA
GCTTGCTCCATTCTTCCTCCTTCAGAGCCAATAAGCATCCCTTTCTACTC
TTTCCCAAACAGCAGCCAGCGTGACCTTTGAGCCATAAGATGGTGTACTG
TCCCTGCTTCACCTGCATGGGACTAACCAGATGAGGACTCAGTCGGTGTC
GGGGCAGATTCAGTGTAGTGTGTCTCTTGAGATGGAGTGTGTATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e08.b1 MSMg01no484_e08.b1 CHROMAT_FILE:
MSMg01no484_e08.b1 PHD_FILE: MSMg01no484_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:46 2005
         (667 letters)



>mm_chr7_87443716_87444782
          Length = 1067

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%), Gaps = 1/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgatac-caccagtaaccaaaatgcctccagccccactttttgtgggactac 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctgaaacacaccagtaaccaaaatgcctccagccccactttttgtgggactac 263

                                                                       
Query: 64  tgcagcaggttaaatgggttattccaaggcccgtgttaaaggtggcatagactatctatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcagcaggttaaatgggttattccaaggcccgtgttaaaggtggcatagactatctatt 323

                                                                       
Query: 124 ccaagctccagttctctagcagcaaaatagtctgtttccttccttggtgtatcgaagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaagctccagttctctagcagcaaaatagtctgtttccttccttggtgtatcgaagaaa 383

                                                                       
Query: 184 aaggaggaaacattctgttcttaaatgttatataaaggggattaatttttttgtttgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggaggaaacattctgttcttaaatgttatataaaggggattaatttttttgtttgttt 443

                                                                       
Query: 244 tttgagacggggcttctctgtgtagccctggctatcctggaacttgttctgtagactaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgagacggggcttctctgtgtagccctggctatcctggaacttgttctgtagactaga 503

                                                                       
Query: 304 ttggcctcaaattcagagatccgattgcctctgcacccctaatgcagggatgtaaggcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggcctcaaattcagagatccgattgcctctgcacccctaatgcagggatgtaaggcat 563

                                                                       
Query: 364 gtgccattattgcctggcatagatattgaaacttttcaaagataaaatactgctgaggtt 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 gtgccattattgcctggcatagatattaaaacttttcaaagataaaatactgctgaggtt 623

                                                                       
Query: 424 ggtggcacaggtggaaggagaaccaaggggccaaggttcaaggtcatccttgtctcatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtggcacaggtggaaggagaaccaaggggccaaggttcaaggtcatccttgtctcatgg 683

                                                                       
Query: 484 atagggatccaacccaggttgttagtcttcacacgttgagccatttgccagcctagcatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 684 atagggatccaacccaggttgttagtcttcacacgttgagccatttgccagtctagcatg 743

                                                                       
Query: 544 ttttgagctttagcaatgttgtatgtaatttgttcctttgcattgttgtaatgtactgat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttgagctttagcaatgttgtatgtaatttgttcctttgcattgttgtaatgtactgat 803

                                                                       
Query: 604 ccattctgttgacatacaagccatctccatttcccatgctatgactaagtgctgcttctt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccattctgttgacatacaagccatctccatttcccatgctatgactaagtgctgcttctt 863

               
Query: 664 tcta 667
           ||||
Sbjct: 864 tcta 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_e08.g1 MSMg01no484_e08.g1 CHROMAT_FILE:
MSMg01no484_e08.g1 PHD_FILE: MSMg01no484_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:46 2005
         (600 letters)



>mm_chr7_87605939_87606938
          Length = 1000

 Score = 1122 bits (580), Expect = 0.0
 Identities = 595/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagtcagggctctgttttacagagaaaccttgtctcaaaaaagacaaaagaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 caggacagtcagggctctgttttacagagaaaccttgtctcaaaaaagacaaaagaaaga 795

                                                                       
Query: 61  agttaaaacagtatgtgagttagaatccataaaaaatggtaggtttttggctattaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agttaaaacagtatgtgagttagaatccataaaaaatggtaggtttttggctattaatgt 735

                                                                       
Query: 121 agtttcctaactggtctccttaatgtcctatgtgagcatgttgtgcttttacttttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agtttcctaactggtctccttaatgtcctatgtgagcatgttgtgcttttacttttatgt 675

                                                                       
Query: 181 tttcccaggccactaacgctagaacagctcactagacacaatacagagtctgtcaagggg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttcccaggccactaacactagaacagctcactagacacaatacagagtctgtcaagggg 615

                                                                       
Query: 241 gtcatagggtctgcatctgctttcttcttccattttgtctcccactagccctcttgaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcatagggtctgcatctgctttcttcttccattttgtctcccactagccctcttgaacc 555

                                                                       
Query: 301 tgctctatcccacagtctatcactttcctccaagcataagagtgactggaaaggatctga 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgctctatcccatagtctatcactttcctccaagcataagagtgactggaaaggatctga 495

                                                                       
Query: 361 aatctaccctctgctcaaggcagagatatgggattagcaccctttcactccaaagccaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatctaccctctgctcaaggcagagatatgggattagcaccctttcactccaaagccaac 435

                                                                       
Query: 421 gctcttggctcagagcaaacccaagccttggtttctaccactgcatccagcttgctccat 480
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 434 gctcttggctcagagcaaacccaagccttggtttttaccactacatccagcttgctccat 375

                                                                       
Query: 481 tcttcctccttcagagccaataagcatccctttctactctttcccaaacagcagccagcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcttcctccttcagagccaataagcatccctttctactctttcccaaacagcagccagcg 315

                                                                       
Query: 541 tgacctttgagccataagatggtgtactgtccctgcttcacctgcatgggactaaccaga 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgacctttgagccataagaaggtgtactgtccctgcttcacctgcatgggactaaccaga 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |