BAC Information

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BAC

Clone NameMSMg01-484E19
Chromosome7 (Build37)
Map Location 107,716,796 - 107,717,458
singlet/doubletsinglet
Overlap geneMrpl48
Upstream geneArrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8
Downstream geneLOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E19.T7 (MSMg01no484_e19.b1)MSMg01-484E19.TJ (MSMg01no484_e19.g1)
ACCAG564021AG564022
length755772
length of high quality
(start - end)		85 (69 - 153)660 (73 - 732)
definitionCHROMAT_FILE: MSMg01no484_e19.b1 PHD_FILE: MSMg01no484_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:48 2005CHROMAT_FILE: MSMg01no484_e19.g1 PHD_FILE: MSMg01no484_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGACGATCCGCGGAA
TTCGCCAGTTTCCCCAACTTTGTTTCCCCTCTCAGCAGGTCATTCGCCAG
GCCTGCCTGGGTGAACAGAGCAATCACTCTATTCACTAGGAAACCTTTAC
AATCCTCCTACCCAAATAACGCAGAAGAAGACAGAAAACGAACTGNCGTC
TTNGNCTCACACACACCAATCCTAGNNCTTGAACACTAAAAAATTCCTTT
ACCTGTTAGCTCATTACCCAAATTGACCCCATNNNNAAAACCGCNTGAAA
TTTTTTNGNNNNCCAAGCCCTGTCCCNATAAAGAAGTNNAACTGNNNNNN
NNCAGNTGNNTNNNNNNATAGTGANCGTTNNNNNNNNNNTTTTNNNNCTA
CCNNCNNNCNCCTGTTNNNNCTGGNTTTCCCCTTTGNNAAAAAATTTTCC
CCAATAATTTTTTTAAAAAAAACCTTTTCCCCCCAAAAAACCTTTTAAAA
AAAATATAAAAAAAAACTCCCTTTTTTAAAAAAAACCCCCCCCCCAAATA
TTTTTTTTTACCCCCCTCATATATTTTTCCTTTAAACCCCCCAAAACAAA
AAAAAACCCCTCCTCCCCTCCNNNNTNTTNNAACTTCCCCCTCAAAAAAA
ATTTTTTTTTTTTTTTTTTTAAAAAAATAAAACCACAAANAAAAAACCCC
CCCTCCCCCTTTTTATTTTTTCTTTCCACCCATTACTCTTCTTTCCTCTC
CCAGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGCAAGGAGACACTCTTAAATTCAG
TTTGGGGCAATTCCTATAATTAGAGCTGCTGGTAATTAAAAAGCTGGCTC
AAACTACTGTTAAATTAACCATTTCCCCCTTAAATGAAAGGTTTGGGTCA
AATTGTCAGTGGTTAAGCTGTTTAATTAGCCAGTTGTTTTCATTGTAAAA
TGTGTAAATTTGAAAGCCTCTTATTCTCAGTAAACTCAACTGGCTTCTTT
CCCTCTACTTGGTGTCATTAAAGCTGAATTTCCTGCTGTCTCAGTAACAT
TCCAGCCTCCTGGGAAGAAAGGCCATTCGTCACTGACAAGCTGAAGATCA
TCCAGTTGCCACAGTTGTAAGATGTAAACCTTCCGACTACTTCTCTCCTT
CCTGTGTCTGTGCCACCAACTGTCCTTCAGAATTTTAGTTTACTAACAGG
GAACCAAGCCTGCCAATCTAGAAGAAGAGTACACAACTGTGCTTTAATTA
TTTCTCTTTAGAAGTTGGAAGAAGCATTTTCAGCAGAGCATGCAGGTAGA
GAAAGGATGAAAGTGAACAGCAGTGGCCAAGAAGCTAATTACAGAATATT
CTCTCCATTCAATACACCCGAGTCCCTCAAGGACAGGGAAAAAACTAGCA
CCTGGCAAACAATATATGTTCCAAGTATATTTAAAAACAAAACAAAAATG
GCTCCCTAAATATTCTAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e19.g1 MSMg01no484_e19.g1 CHROMAT_FILE:
MSMg01no484_e19.g1 PHD_FILE: MSMg01no484_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:49 2005
         (660 letters)



>mm_chr7_107716596_107717658
          Length = 1063

 Score = 1212 bits (627), Expect = 0.0
 Identities = 653/663 (98%), Gaps = 3/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggcaaggagacactcttaaattcagtttggggcaattcctataattagagctgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggcaaggagacactcttaaattcagtttggggcaattcctataattagagctgctgg 260

                                                                       
Query: 61  taattaaaaagctggctcaaactactgttaaattaaccatttcccccttaaatgaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattaaaaagctggctcaaactactgttaaattaaccatttcccccttaaatgaaaggt 320

                                                                       
Query: 121 ttgggtcaaattgtcagtggttaagctgtttaattagccagttgttttcattgtaaaatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttgggtcaaattgtcagtggttaagctgtttaattagccagttgtttttattgtaaaatg 380

                                                                       
Query: 181 tgtaaatttgaaagcctcttattctcagtaaactcaactggcttctttccctctacttgg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaattcgaaagcctcttattctcagtaaactcaactggcttctttccctctacttgg 440

                                                                       
Query: 241 tgtcattaaagctgaatttcctgctgtctcagtaacattccagcctcctgggaagaaagg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgtcattaaagctgaatttcctgctgtctcagtaacattcgagcctcctgggaagaaagg 500

                                                                       
Query: 301 ccattcgtcactgacaagctgaagatcatccagttgccacagttgtaagatgtaaacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattcgtcactgacaagctgaagatcatccagttgccacagttgtaagatgtaaacctt 560

                                                                       
Query: 361 ccgactacttctctccttcctgtgtctgtgccacc---aactgtccttcagaattttagt 417
           | |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 561 ctgactacttctctccttcctgtgtctgtgccacccacaactgtccttcagaattttagt 620

                                                                       
Query: 418 ttactaacagggaaccaagcctgccaatctagaagaagagtacacaactgtgctttaatt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactaacagggaaccaagcctgccaatctagaagaagagtacacaactgtgctttaatt 680

                                                                       
Query: 478 atttctctttagaagttggaagaagcattttcagcagagcatgcaggtagagaaaggatg 537
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 atttctctttagaagttggaagaagcattttcagcagagcatgaaggtagagaaaggatg 740

                                                                       
Query: 538 aaagtgaacagcagtggccaagaagctaattacagaatattctctccattcaatacaccc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagtgaacagcagtggccaagaagctaattacagaatattctctccattcaatacaccc 800

                                                                       
Query: 598 gagtccctcaaggacagggaaaaaactagcacctggcaaacaatatatgttccaagtata 657
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 gagtccctcaaggacagagaaaaagctagcacctggcaaacaatatatgttccaagtata 860

              
Query: 658 ttt 660
           |||
Sbjct: 861 ttt 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1063
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1053
Effective search space:   684450
Effective search space used:   684450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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