BAC Information

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BAC

Clone NameMSMg01-484I01
Chromosome7 (Build37)
Map Location 112,034,290 - 112,034,770
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665
Downstream geneOlfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484I01.T7 (MSMg01no484_i01.b1)MSMg01-484I01.TJ (MSMg01no484_i01.g1)
ACCAG564173AG564174
length735707
length of high quality
(start - end)		650 (84 - 733)627 (72 - 698)
definitionCHROMAT_FILE: MSMg01no484_i01.b1 PHD_FILE: MSMg01no484_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:05 2005CHROMAT_FILE: MSMg01no484_i01.g1 PHD_FILE: MSMg01no484_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACCCGAGCC
GCGGAANTCTCACCTTCCTAATACCGAATGGNTGAGAAGCACCTGAAAAA
ATGTTTAGCATCCTTAATCTTCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGTATCATATTGTATTTTAATGACTACAATATACTAGATTGTTT
GCCCCATGTCCAAAAATGTAAAACAAACAAACAAACAAACAAACAACTTC
TAGCATAGTGTTTATATGATAATATTTTTGAAAAGTCCCTGGTGCTAACC
CTAATCTGGGTGAAATGATAAGTGTTTTGAGTCCAACAAGAGGGCTCATC
AGGCAAAATGCTTGTTGTGTAAGCCTGATAAACTGAATTCAAATCCTGGA
ACATTATAGTAGGAATTAAGAAAAATAAATAAATGAATACATGAAATACT
TTAAAGTACAAGGAGATGCCTTCAGATTCTTCAAAGCTTAATGCGATGCA
CTCAAAAGACAAACCACTTCTACTTGTTTTTCAACTTATCTTCAAAAGTG
ACTCCCATAAGAGCTGTCATACAAAGTTCAATGATTCTATTGTTTATAAA
ATATTCTTCTCCCTGGATTTGTTCCTATTGGTGATTGGTACATAAGCTTT
TACACGTTTTTGCTCAAAGATGACAAAATTAAAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGGAATTCTTTTATGTGCAGACATACAGTTAAA
CCAGGACCATTTGGTCAATATACTTTCTTTTTTTCCATTGTATGATTTTG
CCTTCTTTGTTAAAAAATCAAGTATCTATAGGTGTGTGGGTTTATTTCTG
GGTCTTCAATTTAATTCCATTGATCAACCAGTCTGTTTTCATATCAATGC
TATGTAGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCTCCACAGTTGTT
CTGTAGTATAGCTTGAGGTCAGGGATGATGATTCTTCCAGAAGTTCCTTT
ATGTTACTGATCAGTATTGTTTTGGCTGTCCTGCCTTTTTTGTCTTACAA
TACAAAGTTGAAAATTGTTCATTCAAGGTCTATAGAGGGTTGTATTGGTA
TTTTGATAGGAATTGCATTGAGTCTGTAGATTGCTTCTGGTAAGATGGCT
TTTTTCACTATGTTAATCTTATGGATCCATAAGTTTGGGAAATCTTTCTG
TTTTGATTTCTTCAATTTCCTTCTTCAGAGACTAGAAATTCTTGCCTTAC
TGGTCTTTCACTTGCTTGGTTAGAGTTACACCAAGATATTTTAGATTACT
TGTGGCTATTATGAAGGGTGTTGTTTCTCTAATTTCTTTTTCAGCCAGAT
TATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_i01.b1 MSMg01no484_i01.b1 CHROMAT_FILE:
MSMg01no484_i01.b1 PHD_FILE: MSMg01no484_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:05 2005
         (650 letters)



>mm_chr7_112033721_112034770
          Length = 1050

 Score =  899 bits (465), Expect = 0.0
 Identities = 477/481 (99%)
 Strand = Plus / Minus

                                                                        
Query: 170  cccatgtccaaaaatgtaaaacaaacaaacaaacaaacaaacaacttctagcatagtgtt 229
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1050 cccatgtccaaaaatgtaaaacaaacaaacaaacaaacaaacaacttccagcatagtgtt 991

                                                                        
Query: 230  tatatgataatatttttgaaaagtccctggtgctaaccctaatctgggtgaaatgataag 289
            |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  tatatgataataatggtgaaaagtccctggtgctaaccctaatctgggtgaaatgataag 931

                                                                        
Query: 290  tgttttgagtccaacaagagggctcatcaggcaaaatgcttgttgtgtaagcctgataaa 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tgttttgagtccaacaagagggctcatcaggcaaaatgcttgttgtgtaagcctgataaa 871

                                                                        
Query: 350  ctgaattcaaatcctggaacattatagtaggaattaagaaaaataaataaatgaatacat 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  ctgaattcaaatcctggaacattatagtaggaattaagaaaaataaataaatgaatacat 811

                                                                        
Query: 410  gaaatactttaaagtacaaggagatgccttcagattcttcaaagcttaatgcgatgcact 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  gaaatactttaaagtacaaggagatgccttcagattcttcaaagcttaatgcgatgcact 751

                                                                        
Query: 470  caaaagacaaaccacttctacttgtttttcaacttatcttcaaaagtgactcccataaga 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  caaaagacaaaccacttctacttgtttttcaacttatcttcaaaagtgactcccataaga 691

                                                                        
Query: 530  gctgtcatacaaagttcaatgattctattgtttataaaatattcttctccctggatttgt 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  gctgtcatacaaagttcaatgattctattgtttataaaatattcttctccctggatttgt 631

                                                                        
Query: 590  tcctattggtgattggtacataagcttttacacgtttttgctcaaagatgacaaaattaa 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  tcctattggtgattggtacataagcttttacacgtttttgctcaaagatgacaaaattaa 571

             
Query: 650  a 650
            |
Sbjct: 570  a 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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