BAC Information

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BAC

Clone NameMSMg01-484N13
Chromosome7 (Build37)
Map Location 116,060,179 - 116,192,171
singlet/doubletdoublet
Overlap geneNlrp10, Eif3s5, BC049265, Tub, Ric3
Upstream geneOlfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519
Downstream geneLmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484N13.T7 (MSMg01no484_n13.b1)MSMg01-484N13.TJ (MSMg01no484_n13.g1)
ACCAG564436AG564437
length765753
length of high quality
(start - end)		685 (72 - 756)605 (77 - 681)
definitionCHROMAT_FILE: MSMg01no484_n13.b1 PHD_FILE: MSMg01no484_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:33 2005CHROMAT_FILE: MSMg01no484_n13.g1 PHD_FILE: MSMg01no484_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,060,179 - 116,060,810)(116,191,565 - 116,192,171)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGCC
GCGGAATTCAGTAATTGCAAGCCCTGCTGTGTACAGCCAGAATACACCAT
AGCAACCGTACTTTCAGTTTTGGATAAGTGAGTATTTTAGTATTGACAAG
CCAAATGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGACAGAGA
CAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA
GAGACAGAGACAGAGAGACAGAGAGAGACAGAGAGAGAGAGACAAAGACA
GACAGAAAGAGAGAGACAGATAGTTTTTAGAGACACAGAGAGAGACACAG
AGACACAGAGAGAGTCAGAGAGAGACTGAGATTATATAAAATGTTTACAA
CATCTAGCAAAAAACAACTTGAGGAAATTAGGGCTGTTTCCAGTTAACTA
GAATCCCAACTGAATGCCCACAGCTGAACTTCTTACTCTCTTTCCCACCA
TGGGGGCTCTTATATTGTGGGATAAGTGACAACATCTGTTAGAAATAGTT
TGGTCCTTCTTAGAAAGGGGAACAGAATACTCATGGGAGCAAATACGGAG
ACAAAGTGTGGAGCAGAAACTGAAGGTAAGGCCATCCAAAGACTGCCCCT
CTTGGGATCCATCCCATATACAGTCACCAAGCCCAGACACTATTGTGGAT
ACCAAAAAGTGCATGCTGTCAGGAGCCTGATATTGCTGTCTCCTGTGAGG
CTTTGCCAGAGACTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAAAGGAGAAGAGGAAAAA
GAAAAGGCACCACACTGTGCGTAGATTTCAGTTTGTGGATCTCAGTTCCC
CAGTTTCTCTGATTTACTTGGCTGAGTGTTGTGAATTATCTACCTCTAAA
ATTTCAGACTGTACAAATGGAAAAAGCCCTGTGGTTCCAGTCTAGTATTT
TCCTTGGTTGAGTCTAATGGCCTAGAATATTTTTCTTTGAGGTCTTGCTT
CAGAGAAAGTGTCTCAAAGTGAAGGGAATAAATGTAAGAGCTGCAGGGAA
ACTGGGGAATCGGGCTGCTGAGGCATGAGGGTGGAACCACTGGGATCTTG
TTTCCATGTTGATTCATCTTGGAACCTCAAGCAGCTACTTGATTGAAATA
TTCTGGAGATTAGATTCCCCGTTTATAAAATCACAGCATTGAACTAACAT
CTCTGGTTACAGCCATGACATCCAGAAATCACCTGTTGTTAGACCTCCTC
TTTGATGGTCCGAACAGATCATGGTGAAGTTTTTCCATTATCTAGGGGTG
CTGACCACTAAATGGCTGGATTGTCTGTTTCTCAGCAGAGCACAGGCTGT
GACTTCTGACCAAGAGAAACGATTACTGCATCAGCTCCGAGAAATCACCA
GGGTCATGAAAGAAGGCAAGTTCATCGACACATCTCCAGAGAAGGAAGCT
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_n13.b1 MSMg01no484_n13.b1 CHROMAT_FILE:
MSMg01no484_n13.b1 PHD_FILE: MSMg01no484_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:33 2005
         (685 letters)



>mm_chr7_116059926_116061010
          Length = 1085

 Score = 1073 bits (555), Expect = 0.0
 Identities = 627/689 (91%), Gaps = 61/689 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctgctgtgtacagccagaatacaccatagcaaccgtactttcagttttggataagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccctgctgtgtacagccagaatacaccatagcaaccgtactttcagttttggataagtga 313

                                                                       
Query: 61  gtattttagtattgacaagccaaatgtgtgtgtgtgtgtgtgagagagagagagagagag 120
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 314 gtattttagtattgacaagccaaatgtgtgtgtgtgtg----------agagagagagag 363

                                                                       
Query: 121 agacagagacagagacagagacagagacagagacagagacagagacagagacagagacag 180
           |||||||||||||||||||||||||||||||||                           
Sbjct: 364 agacagagacagagacagagacagagacagaga--------------------------- 396

                                                                       
Query: 181 agacagagacagagagacagagagagacagagagagagagacaaagacagacagaaagag 240
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ---------------gacagagagagacagagagagagagacaaagacagacagaaagag 441

                                                                       
Query: 241 agagacagatagtttttagaga----cacagagagagacacagagacacagagagagtca 296
           ||||||||| ||     |||||    ||||||||||||||||||||||||||||||||||
Sbjct: 442 agagacagaaag-----agagagagacacagagagagacacagagacacagagagagtca 496

                                                                       
Query: 297 gagagagactgagattatataaaatgtttacaacatctagcaaaaaacaacttgaggaaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagagagactgagattatataaaatgtttacaacatctagcaaaaaacaacttgaggaaa 556

                                                                       
Query: 357 ttagggctgtttccagttaactagaatcccaactgaatgcccacagctgaacttcttact 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttagggctgtttccagttaactagaatcccaactgaatgcccacagctgaacttcttact 616

                                                                       
Query: 417 ctctttcccaccatgggggctcttatattgtgggataagtgacaacatctgttagaaata 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctctttcccaccatgggggctcttatattgtgggataagtgacaacatctgttagaaata 676

                                                                       
Query: 477 gtttggtccttcttagaaaggggaacagaatactcatgggagcaaatacggagacaaagt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtttggtccttcttagaaaggggaacagaatactcatgggagcaaatacggagacaaagt 736

                                                                       
Query: 537 gtggagcagaaactgaaggtaaggccatccaaagactgcccctcttgggatccatcccat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtggagcagaaactgaaggtaaggccatccaaagactgcccctcttgggatccatcccat 796

                                                                       
Query: 597 atacagtcaccaagcccagacactattgtggataccaaaaagtgcatgctgtcaggagcc 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atacagtcaccaagcccagacactattgtggataccaaaaagtgcatgctgtcaggagcc 856

                                        
Query: 657 tgatattgctgtctcctgtgaggctttgc 685
           |||||||||||||||||||||||||||||
Sbjct: 857 tgatattgctgtctcctgtgaggctttgc 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_n13.g1 MSMg01no484_n13.g1 CHROMAT_FILE:
MSMg01no484_n13.g1 PHD_FILE: MSMg01no484_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:34 2005
         (605 letters)



>mm_chr7_116191365_116192371
          Length = 1007

 Score = 1108 bits (573), Expect = 0.0
 Identities = 598/607 (98%), Gaps = 2/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagaaaggagaagaggaaaaagaaaaggcacca--cactgtgcgtagatttcagttt 58
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 807 caaaagaaaggagaagaggaaaaagaaaaggcaccaatcactgtgcgtagatttcagttt 748

                                                                       
Query: 59  gtggatctcagttccccagtttctctgatttacttggctgagtgttgtgaattatctacc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gtggatctcagttccccagtttctctgatttacttggctgagtgttgtgaattatctacc 688

                                                                       
Query: 119 tctaaaatttcagactgtacaaatggaaaaagccctgtggttccagtctagtattttcct 178
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tctgaaatttcagactgtacaaatggaaaaagccctgtggttccagtctagtattttcct 628

                                                                       
Query: 179 tggttgagtctaatggcctagaatatttttctttgaggtcttgcttcagagaaagtgtct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tggttgagtctaatggcctagaatatttttctttgaggtcttgcttcagagaaagtgtct 568

                                                                       
Query: 239 caaagtgaagggaataaatgtaagagctgcagggaaactggggaatcgggctgctgaggc 298
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 catagtgaagggaataaatgtaagagctgcagggaaactggggaatcgggctgctgaggc 508

                                                                       
Query: 299 atgagggtggaaccactgggatcttgtttccatgttgattcatcttggaacctcaagcag 358
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ctgagggtggaaccactgggatcttggttccatgttgattcatcttggaacctcaagcag 448

                                                                       
Query: 359 ctacttgattgaaatattctggagattagattccccgtttataaaatcacagcattgaac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctacttgattgaaatattctggagattagattccccgtttataaaatcacagcattgaac 388

                                                                       
Query: 419 taacatctctggttacagccatgacatccagaaatcacctgttgttagacctcctctttg 478
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 387 taacatctctggctacagccatgacatccagaaatcacctgttgctagacctcctctttg 328

                                                                       
Query: 479 atggtccgaacagatcatggtgaagtttttccattatctaggggtgctgaccactaaatg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggtccgaacagatcatggtgaagtttttccattatctaggggtgctgaccactaaatg 268

                                                                       
Query: 539 gctggattgtctgtttctcagcagagcacaggctgtgacttctgaccaagagaaacgatt 598
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctgtattgtctgtttctcagcagagcacaggctgtgacttctgaccaagagaaacgatt 208

                  
Query: 599 actgcat 605
           |||||||
Sbjct: 207 actgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1007
Length adjustment: 10
Effective length of query: 595
Effective length of database: 997
Effective search space:   593215
Effective search space used:   593215
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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