Query= MSMg01no484_p16.b1 MSMg01no484_p16.b1 CHROMAT_FILE:
MSMg01no484_p16.b1 PHD_FILE: MSMg01no484_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:44 2005
(673 letters)
>mm_chr7_152047028_152048100
Length = 1073
Score = 1274 bits (659), Expect = 0.0
Identities = 667/670 (99%)
Strand = Plus / Minus
Query: 4 ggaattccgcaccgtgagaccaggcttccgaaggcgggaggcggggctcggccgccgggt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggaattccgcaccgagagaccaggcttccgaaggcgggaggcggggctcggccgccgggt 814
Query: 64 gcgctctcagtcctggagcccaaggggtgggagctcgactctactcagcccccgagacta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gcgctctcagtcctggagcccaaggggtgggagctcgactctactcagcccccgagacta 754
Query: 124 ctactgcccgggaccctaccccctcggcgcgcccagaactcactgtccctcgtgtctgcg 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctactgcccgggaccctatcccctcggcgcgcccagaactcactgtccctcgtgtctgcg 694
Query: 184 tgcacaccaccgatgcggccgtcgggcagcacctgcaggtggaatccgatgcccacgttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgcacaccaccgatgcggccgtcgggcagcacctgcaggtggaatccgatgcccacgttg 634
Query: 244 cagtagagccgccgaagccttttgaggcccagcaggtagtcccctgcgccgctgcggacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagtagagccgccgaagccttttgaggcccagcaggtagtcccctgcgccgctgcggacc 574
Query: 304 gccgcctgcgggggctgcgcggccaccggcaggcgtgccagcgagcgggccaccaagccg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gccgcctgcgggggctgcgcggccaccggcaggcgtgccagcgagcgggccaccaagccg 514
Query: 364 tcccagccgtgccccaattctgcgtgccgcgtgccgttgggtgcggcggtccctcggtcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcccagccgtgccccaattctgcgtgccgcgtgccgttgggtgcggcggtccctcggtcc 454
Query: 424 gccagggccaccaccagggccagcaggaccctgggcagcagcgtccctgtggtcggcccg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gccagggccaccaccagggccagcaggaccctgggcagcagcgtccctgtggtcggcccg 394
Query: 484 cgtttcgccatcccggcccgcgggccgtgcgtgagttcgagctgcgggccgtgagttcgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgtttcgccatcccggcccgcgggccgtgcgtgagttcgagctgcgggccgtgagttcgg 334
Query: 544 tgagtgctgcgcacagacctaagtagcgagagcaaatagggacgcaacggtggcgggata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgagtgctgcgcacagacctaagtagcgagagcaaatagggacgcaacggtggcgggata 274
Query: 604 gtccccgcgcgcccagccctccggagcagtggtatatatagncggcgccccctcctactc 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 273 gtccccgcgcgcccagccctccggagcagtggtatatatagccggcgccccctcctactc 214
Query: 664 gcctgccccg 673
||||||||||
Sbjct: 213 gcctgccccg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_p16.g1 MSMg01no484_p16.g1 CHROMAT_FILE:
MSMg01no484_p16.g1 PHD_FILE: MSMg01no484_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:44 2005
(624 letters)
>mm_chr7_152011565_152012588
Length = 1024
Score = 1164 bits (602), Expect = 0.0
Identities = 614/624 (98%), Gaps = 10/624 (1%)
Strand = Plus / Plus
Query: 1 tctctatcagctcacataatccctggcgacaaggtgccaggttccaaagtacctttgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctatcagctcacataatccctggcgacaaggtgccaggttccaaagtacctttgtca 260
Query: 61 ctggtccttgggcagagtcttggtggagttttaaaaaatgaccatatggtctttgatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtccttgggcagagtcttggtggagttttaaaaaatgaccatatggtctttgatcct 320
Query: 121 cttctcagggagaagtggctttgtccccctcccctcaagctctggtggctgtgttttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctcagggagaagtggctttgtccccctcccctcaagctctggtggctgtgttttgct 380
Query: 181 tgtaactaaagtgactgggtggcagcagaggcacctcctcccagaagtccctctggctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaactaaagtgactgggtggcagcagaggcacctcctcccagaagtccctctggctcc 440
Query: 241 tgctttgttttctagtgaggcttgctccagggctacagtccccacctccaacacacacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctttgttttctagtgaggcttgctccagggctacagtccccacctccaacacacacac 500
Query: 301 acacacacacacacacacacacacacacacacacacacacacacacacacacactatgcc 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 acacacacacacacacacacacacacacacacacacacacacac----------tatgcc 550
Query: 361 ccagagtccaactctttggccccacccccagctggtcaagtccgacgcagcacatgggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccagagtccaactctttggccccacccccagctggtcaagtccgacgcagcacatgggag 610
Query: 421 ctaaggcacctcctcaccttctgtttccatctaatgttctgttctctcagctttcctgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctaaggcacctcctcaccttctgtttccatctaatgttctgttctctcagctttcctgtc 670
Query: 481 tttccagctgagaccaagcagcctgagggagctgacatgtggcatcatccctggtccttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttccagctgagaccaagcagcctgagggagctgacatgtggcatcatccctggtccttc 730
Query: 541 ctaactggtgggatcagagagtgaagagctgaactatctgtcactttgagtcccaagctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctaactggtgggatcagagagtgaagagctgaactatctgtcactttgagtcccaagctg 790
Query: 601 gcttgttagcagctctgggggaca 624
||||||||||||||||||||||||
Sbjct: 791 gcttgttagcagctctgggggaca 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
