Query= MSMg01no485_e18.b1 MSMg01no485_e18.b1 CHROMAT_FILE:
MSMg01no485_e18.b1 PHD_FILE: MSMg01no485_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:11 2005
(508 letters)
>mm_chr7_52201166_52202073
Length = 908
Score = 897 bits (464), Expect = 0.0
Identities = 497/508 (97%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 1 tagccttgaactcagaaatctggctgtctctgcctcccaagtgctgggattaaaggcgtg 60
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 203 tagccttgaactcagaaatccgcctgtctctgcctcccaagtgctgggattaaaggtgtg 262
Query: 61 tgccaccaccatccagcctgtgttgagatttaaaaaaaacattttaaaaaaatgtatgtg 120
||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||
Sbjct: 263 tgccaccaccatccagcctgtgttgggattttaaaaaaa-atttt-aaaaaatgtatgtg 320
Query: 121 tatgaatgttctgcctgcatgcatgtaagagcgctgtacgtgtgtctgttgcccagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgaatgttctgcctgcatgcatgtaagagcgctgtacgtgtgtctgttgcccagggag 380
Query: 181 accagaagagggtgtcagatcgtcctgaaactggagttacaggtgattttgagctgctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagaagagggtgtcagatcgtcctgaaactggagttacaggtgattttgagctgctaa 440
Query: 241 gtggattcttggaaccaaacctcgtcctctacaaaagcagctactgtcttagctaccaag 300
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gtggattctgggatccaaacctcgtcctctacaaaagcagctactgtcttagctaccgag 500
Query: 301 ccttttctctttttaagttacatttatgttttagtgtgaggtggggcacatgtatgctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttttctctttttaagttacatttatgttttagtgtgaggtggggcacatgtatgctac 560
Query: 361 agtacaaatgagaagaccagaaggcaacttagtgacgctccccttcattgactggatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtacaaatgagaagaccagaaggcaacttagtgacgctccccttcattgactggatctg 620
Query: 421 ggctcagactcaagccctctcatcaccccagatctgctttctatagcttctgccttactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctcagactcaagccctctcatcaccccagatctgctttctatagcttctgccttactg 680
Query: 481 aacagggtcataggctacatctatctaa 508
|||||||||| |||||||||||||||||
Sbjct: 681 aacagggtcacaggctacatctatctaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e18.g1 MSMg01no485_e18.g1 CHROMAT_FILE:
MSMg01no485_e18.g1 PHD_FILE: MSMg01no485_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:11 2005
(487 letters)
>mm_chr7_52362832_52363721
Length = 890
Score = 735 bits (380), Expect = 0.0
Identities = 471/526 (89%), Gaps = 44/526 (8%)
Strand = Plus / Minus
Query: 1 acatacagtaaggcaagaacttcctgaggctgtgctctgatatccacacatttgccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 acatacagtaaggcaagaacttcctgaggctgtgctctgatatccacacatttgccatgg 781
Query: 61 cgtgggtacacacgtttcata---------------aactgcaaataaaggtttaataaa 105
||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct: 780 cgtgggtacacacatttcataaacacacatagtaacaactgccaataaaggtttaataaa 721
Query: 106 ttaataagtctggcactggtggcgcacgcctttaatcccagcacgcaggaggcagacgcg 165
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 720 ttaataagtctggcagtggtggcgcacgcctttaatcccagcactcgggaggcagaggca 661
Query: 166 ggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 225
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gacagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 601
Query: 226 ttacacagagaaaccctgtctcaaaaaaaccaaaggaaaaaaaccaaaacaaaccaaaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttacacagagaaaccctgtctcaaaaaaaccaaaggaaaaaaaccaaaacaaaccaaaaa 541
Query: 286 aaaa---gaataagtgaggttgtggagaacaatgcaatggctgagtgagcaaacctcttg 342
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaaaaaagaataagtgaggttgtggagaacaatgcaatggctgagtgagcaaacctcttg 481
Query: 343 ctaccttacagctcctggagtccacacgggcacacacacaca-agcacaca--------- 392
||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 480 ctaccttacagctcctggagttcacacgggcacacacacacaca-cacacacacacacac 422
Query: 393 --------g---gcatgcacatgcatacatatacacacatggataataagtaaaattaaa 441
| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 acacacacgcatgcatgcacatgcatacatatacacacatggataataagtaaaattaca 362
Query: 442 ttttaaaaaatgtgtaagtgtcaagtatgaatgtgtatgcttagga 487
||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 361 ttttaaaaaatgtgt----gtcaagtacgaatgtgtatgcttagga 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 890
Length adjustment: 10
Effective length of query: 477
Effective length of database: 880
Effective search space: 419760
Effective search space used: 419760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
