BAC Information

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BAC

Clone NameMSMg01-486G19
Chromosome7 (Build37)
Map Location 77,283,386 - 77,452,868
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486G19.T7 (MSMg01no486_g19.b1)MSMg01-486G19.TJ (MSMg01no486_g19.g1)
ACCAG565631AG565632
length761766
length of high quality
(start - end)		645 (77 - 721)682 (74 - 755)
definitionCHROMAT_FILE: MSMg01no486_g19.b1 PHD_FILE: MSMg01no486_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:44 2005CHROMAT_FILE: MSMg01no486_g19.g1 PHD_FILE: MSMg01no486_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,283,386 - 77,284,018)(77,452,378 - 77,452,868)
sequence
NTTTACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCC
GCGGAATTCACAGTCCTTTCGCCTCAGCTTCTGAGGCCCTGAGATTATTA
GCATATAGGGCTAAACCTGGATATTTTCCAATCATCAGTGATAAAGTAAA
GATTTGGACAACATATTTGGAGAAAGGCCACACAGGCTCAATGAGTGAAG
GTTTGCTCCACCTGTCTTGCCCTATTCTCCTGCATCTAGAGGCAGATGCT
GACTAGAAGGAGAATGCTATCATGTATTATATACTTAGGAAAAGTAGCCA
CATAGGACCAGAGAACTATCAGGCTTACTTATGTGAAAAGTCCGGACTGG
TCAGGTCTGAGTTGGTGGTTCATGGATACATGTGAGTCCAGATATCCCTA
CCGTAATTACTCCTAGGACTGAACATGGTACCTGAAACCCAAGATCAGCT
TCATCTCCTTTGAACTAATGAATTGCCAAAAGTATGCAGATCCAGATGCC
TGCACTACAGTGTGAGGCACAGGACCTCAGAGGATTCTGGGTAACAAAGG
AAAGGGTCCTAGATAAAATGTACTCATAAGGAGATGCTGAATAACGGCAA
CTCCGGAATCATTGTCTCTTTCTTACACAAATCTGGTAGTTTACATGGTG
GGAGAACTAAACCTCTTTGGAAATTGCTATAACAAATTACGCCCCTTCTA
TCCTGTACCACTATTCCCATAAAGATCACTCTCATCCAAAAAGCAGAAAT
TAGTTCACTAN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTGAAGAGGTATTTCCTATATCTTA
CTTTAAATTTCCTTAGCATTAGTGTCTCAGAACAGCCTGGTCTCTTGTCC
CGAGCAATCTTTCTCGCCGGCAAGAACACACTCGGACAACCGGATTCTTC
TGCGGCAAGCTTTATTGCTTCTTAAGGAGGGAAGATCCAGACCCCAGAAA
ATGGTGCTGCTTATATAGCCCTCAGCGTGGCGTTTCAGCACTTGATGTGG
CGTGTCAGCTCCTGATTTGTTGCTCGCCCATCACCTCATTACTACGCCCG
GAGATGGGCAGTGACTAGGCGTGAGTTCACTCTCGCACTTGCGCACAAGG
CTTGTTTACTAGTTAGGCACAGCGGAAGCCAGCGCCATCCTATAATGGCG
ATTGCTCGCGGCACAGCTCTCCACAGTCTCTCATGGAAGGAGAGGCAGTA
GAATAAGGATCTATCGGTTTTATTGCCTAGTACATATCTTTAATGCCTAA
GTAAATCTCCCGTACTGTGTAGTCTGGACTTAGTCATTCTAACTTTGAAG
AACTCCCATCATGGTCATATCTCTGTGGCGTTCATGTCCTTGCCCTGTTC
TGAAATCAGCCATCCCCGCACTACATGGGTCTTTTATCTCTAAATTAACT
TCCTGTTATTATCGTGTATGTGCCTGTAGGTTTGGACAGGGAGAGAACTC
TATGGGGTAGGTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_g19.b1 MSMg01no486_g19.b1 CHROMAT_FILE:
MSMg01no486_g19.b1 PHD_FILE: MSMg01no486_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:44 2005
         (645 letters)



>mm_chr7_77283186_77284230
          Length = 1045

 Score = 1147 bits (593), Expect = 0.0
 Identities = 623/633 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttctgaggccctgagattattagcatatagggctaaacctggatattttccaatcatc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttctgaagccctgagattattagcatatagggctaaacctggatattttccaatcatc 260

                                                                       
Query: 61  agtgataaagtaaagatttggacaacatatttggagaaaggccacacaggctcaatgagt 120
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagataaagcaaagatttggacaacatatttggagaaaggccacacaggctcaatgagt 320

                                                                       
Query: 121 gaaggtttgctccacctgtcttgccctattctcctgcatctagaggcagatgctgactag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gaaggtttgctccacctgtcttgccctattctcctgcatctagaggcagatgcttactag 380

                                                                       
Query: 181 aaggagaatgctatcatgtattatatacttaggaaaagtagccacataggaccagagaac 240
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aaggagaatgttatcatgtattatatacttaggaaaagtagccacatacgaccagagaac 440

                                                                       
Query: 241 tatcaggcttacttatgtgaaaagtccggactggtcaggtctgagttggtggttcatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcaggcttacttatgtgaaaagtccggactggtcaggtctgagttggtggttcatgga 500

                                                                       
Query: 301 tacatgtgagtccagatatccctaccgtaattactcctaggactgaacatggtacctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tacatgtgagtccagatatccctaccgtaattactcctaggaccgaacatggtacctgaa 560

                                                                       
Query: 361 acccaagatcagcttcatctcctttgaactaatgaattgccaaaagtatgcagatccaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 acccaagatcagcttcatctcctttgaactaatgaattgccaaaagtatgcagacccaga 620

                                                                       
Query: 421 tgcctgcactacagtgtgaggcacaggacctcagaggattctgggtaacaaaggaaaggg 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tgcctgcactacagtgtgaggcacaggacctcaaaggattctgggtaacaaaggaaaggg 680

                                                                       
Query: 481 tcctagataaaatgtactcataaggagatgctgaataacggcaactccggaatcattgtc 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctagataaaatgtactcagaaggagatgctgaataacggcaactccggaatcattgtc 740

                                                                       
Query: 541 tctttcttacacaaatctggtagtttacatggtgggagaactaaacctctttggaaattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctttcttacacaaatctggtagtttacatggtgggagaactaaacctctttggaaattg 800

                                            
Query: 601 ctataacaaattacgccccttctatcctgtacc 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 ctataacaaattacgccccttctatcctgtacc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_g19.g1 MSMg01no486_g19.g1 CHROMAT_FILE:
MSMg01no486_g19.g1 PHD_FILE: MSMg01no486_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:44 2005
         (682 letters)



>mm_chr7_77451787_77452868
          Length = 1082

 Score =  895 bits (463), Expect = 0.0
 Identities = 484/491 (98%)
 Strand = Plus / Minus

                                                                        
Query: 192  atagccctcagcgtggcgtttcagcacttgatgtggcgtgtcagctcctgatttgttgct 251
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1082 atagccctcagcgtgacgtttcagcacctgatgtggcgtgtcagctcctgatttgttgct 1023

                                                                        
Query: 252  cgcccatcacctcattactacgcccggagatgggcagtgactaggcgtgagttcactctc 311
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1022 cgcccatcacctcattactacgccccgagatgggcagtgactaggcgtgagttcactctc 963

                                                                        
Query: 312  gcacttgcgcacaaggcttgtttactagttaggcacagcggaagccagcgccatcctata 371
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 962  gcacttgcgcacaaggcttgtttactagttaggcacagcagaagccagcgccatcttata 903

                                                                        
Query: 372  atggcgattgctcgcggcacagctctccacagtctctcatggaaggagaggcagtagaat 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  atggcgattgctcgcggcacagctctccacagtctctcatggaaggagaggcagtagaat 843

                                                                        
Query: 432  aaggatctatcggttttattgcctagtacatatctttaatgcctaagtaaatctcccgta 491
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 842  aaggatctatcggttttattgcctagtacatagctttaatgcctaagtaaatctcccgta 783

                                                                        
Query: 492  ctgtgtagtctggacttagtcattctaactttgaagaactcccatcatggtcatatctct 551
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 782  ctgtgtagtctggacttagtcattctaactttgaagaactcccatcatgatcatatctct 723

                                                                        
Query: 552  gtggcgttcatgtccttgccctgttctgaaatcagccatccccgcactacatgggtcttt 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  gtggcgttcatgtccttgccctgttctgaaatcagccatccccgcactacatgggtcttt 663

                                                                        
Query: 612  tatctctaaattaacttcctgttattatcgtgtatgtgcctgtaggtttggacagggaga 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  tatctctaaattaacttcctgttattatcgtgtatgtgcctgtaggtttggacagggaga 603

                       
Query: 672  gaactctatgg 682
            |||||||||||
Sbjct: 602  gaactctatgg 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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