BAC Information

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BAC

Clone NameMSMg01-486N15
Chromosome7 (Build37)
Map Location 122,879,228 - 123,066,744
singlet/doubletdoublet
Overlap geneSox6, LOC100042779
Upstream geneInsc, EG627967, LOC668472
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486N15.T7 (MSMg01no486_n15.b1)MSMg01-486N15.TJ (MSMg01no486_n15.g1)
ACCAG565958AG565959
length727752
length of high quality
(start - end)		675 (53 - 727)552 (83 - 634)
definitionCHROMAT_FILE: MSMg01no486_n15.b1 PHD_FILE: MSMg01no486_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:16 2005CHROMAT_FILE: MSMg01no486_n15.g1 PHD_FILE: MSMg01no486_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,879,228 - 122,879,899)(123,066,193 - 123,066,744)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTCTATTCTAGTCTACAGAAAGATAGTCTTAAACAA
TAACAACAACAACAACAAATCAACAATAATACACGTGTTTGATTTCAGTA
CTTTACACTATTCTTAGCCTTCATTTACTGGTACTTAGATGTATCAATTA
CATGATACGAATAACCCAACATTTAGAAGCTTCAGACGTTAAGAAGCGTT
CCAAAGCACATAGAACAACCACAAATACCTGCTCCAGATGCTAAGAAACC
CATGGTGCCTACATGGACTCATATGCAAATATAAAAATAAAAATTAATAT
GCAAGCAAGTTTAATATGTGAAATACAAGCAGGTCATATGTACTGTTACT
ACCTTAGCTGCATATATTATACATATACATATAAAGTATACACATTGTAT
ACTTTAAAATACACAGCATATATTAACTCCCACGATCTATATCTCATAGA
GAAACTTTCATTCACATCATGTTGATAGGAGAGTGGCATGCACGGGGCAC
CTAACTCTTCAGACTGACTGACTACCACTGCTTTCTGATGCTTTTGTTTT
AAACTGACTCCCTCCCTCAGATTAGTTTTTCAAGACCAAATCCCCTGCTC
ATATGTTAACACAAAAGGATCCCCTCATCAAATTAAACACTAATACATTC
ATTTACTTGGAGTCTGTTCTTGATCAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGAAAAAAACCTTGT
AAATAGTTCAAGTACAATATATGTGTTTGTAACTGATATTCCCATTTATT
AATCCTGCCTATATTTATGGTGAATTGCTTTGGGCTCTTGCACTGTTTTG
TGGTGTATCACTAAGAAATAGGTAATGTGCATATCAGAGTTTCTCACATA
TTCTCTTTTACTTGTGCTTAGAGCTACTAGAATTGTTAACTAAACTTTAT
ACACAAATTACTACCATAATTCAGTATTTTCAGGAATTTTTAAAGTAGAG
GATCTATCTATTGAGTTAAGAAGAGAAAATACGAAGATCTGACATATTAA
AATTTCCCAAGCATTTATCCCATTTTCATTCATCTTTAATTTATTTTGTG
AGTGAAATAAGTTTTGGGTTTAATTTTCATCATTGAATGATATGATATTA
GGCTGAAAATAATATTTAGAAACCCTGACATTCCAAAGCAATTATCTTTT
AATCCTCAATTAGTTTAAAAATACCATGGCCAATGTGAACTTGCCCATGA
ACCGTTATGTACATCTGGGAACTTTAACGTGGTTCTAGCGTGACCAATCT
AGAAAGCAGATATCCTAGCTTCTTCCCCACAGAGAAGGTGCAGCACTTTT
TCATTGAATTGATTTGTGTTTGTCTGAGAGAAAATGGATAAATAATGATT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_n15.b1 MSMg01no486_n15.b1 CHROMAT_FILE:
MSMg01no486_n15.b1 PHD_FILE: MSMg01no486_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:16 2005
         (675 letters)



>mm_chr7_122879025_122880099
          Length = 1075

 Score = 1268 bits (656), Expect = 0.0
 Identities = 668/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtctattctagtctacagaaagatagtcttaaacaataacaacaacaacaa 63
           ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtctagcctagtctacagaaggatagtcttaaacaataacaacaacaacaa 263

                                                                       
Query: 64  caaatcaacaataatacacgtgtttgatttcagtactttacactattcttagccttcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaatcaacaataatacacgtgtttgatttcagtactttacactattcttagccttcatt 323

                                                                       
Query: 124 tactggtacttagatgtatcaattacatgatacgaataacccaacatttagaagcttcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactggtacttagatgtatcaattacatgatacgaataacccaacatttagaagcttcag 383

                                                                       
Query: 184 acgttaagaagcgttccaaagcacatagaacaaccacaaatacctgctccagatgctaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgttaagaagcgttccaaagcacatagaacaaccacaaatacctgctccagatgctaag 443

                                                                       
Query: 244 aaacccatggtgcctacatggactcatatgcaaatataaaaataaaaattaatatgcaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacccatggtgcctacatggactcatatgcaaatataaaaataaaaattaatatgcaag 503

                                                                       
Query: 304 caagtttaatatgtgaaatacaagcaggtcatatgtactgttactaccttagctgcatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagtttaatatgtgaaatacaagcaggtcatatgtactgttactaccttagctgcatat 563

                                                                       
Query: 364 attatacatatacatataaagtatacacattgtatactttaaaatacacagcatatatta 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attatatatatacatataaagtatacacattgtatactttaaaatacacagcatatatta 623

                                                                       
Query: 424 actcccacgatctatatctcatagagaaactttcattcacatcatgttgataggagagtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actcccacgatctatatctcatagagaaactttcattcacatcatgttgataggagagtg 683

                                                                       
Query: 484 gcatgcacggggcacctaactcttcagactgactgactaccactgctttctgatgctttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatgcacggggcacctaactcttcagactgactgactaccactgctttctgatgctttt 743

                                                                       
Query: 544 gttttaaactgactccctccctcagattagtttttcaagaccaaatcccctgctcatatg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttttaaactgactccctccctcagattagtttttcaagaccaaatcccctgctcatatg 803

                                                                       
Query: 604 ttaacacaaaaggatcccctcatcaaattaaacactaatacattcatttacttggagtct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaacacaaaaggatcccctcatcaaattaaacactaatacattcatttacttggagtct 863

                       
Query: 664 gttcttgatcaa 675
           ||||||||||||
Sbjct: 864 gttcttgatcaa 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_n15.g1 MSMg01no486_n15.g1 CHROMAT_FILE:
MSMg01no486_n15.g1 PHD_FILE: MSMg01no486_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:16 2005
         (552 letters)



>mm_chr7_123065993_123066944
          Length = 952

 Score = 1036 bits (536), Expect = 0.0
 Identities = 548/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctgaaaaaaaccttgtaaatagttcaagtacaatatatgtgtttgtaactgatattcc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gcctgagaaaaaccttgtaaatagttcaagtacaatatatgtgtttgtaactgatattcc 693

                                                                       
Query: 61  catttattaatcctgcctatatttatggtgaattgctttgggctcttgcactgttttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 catttattaatcctgcctatatttatggtgaattgctttgggctcttgcactgttttgtg 633

                                                                       
Query: 121 gtgtatcactaagaaataggtaatgtgcatatcagagtttctcacatattctcttttact 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtgtgtcactaagaaataggtaatgtgcatatcagagtttctcacatattctcttttact 573

                                                                       
Query: 181 tgtgcttagagctactagaattgttaactaaactttatacacaaattactaccataattc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtacttagagctactagaattgttaactaaactttatacacaaattactaccataattc 513

                                                                       
Query: 241 agtattttcaggaatttttaaagtagaggatctatctattgagttaagaagagaaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtattttcaggaatttttaaagtagaggatctatctattgagttaagaagagaaaatac 453

                                                                       
Query: 301 gaagatctgacatattaaaatttcccaagcatttatcccattttcattcatctttaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaagatctgacatattaaaatttcccaagcatttatcccattttcattcatctttaattt 393

                                                                       
Query: 361 attttgtgagtgaaataagttttgggtttaattttcatcattgaatgatatgatattagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attttgtgagtgaaataagttttgggtttaattttcatcattgaatgatatgatattagg 333

                                                                       
Query: 421 ctgaaaataatatttagaaaccctgacattccaaagcaattatcttttaatcctcaatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgaaaataatatttagaaaccctgacattccaaagcaattatcttttaatcctcaatta 273

                                                                       
Query: 481 gtttaaaaataccatggccaatgtgaacttgcccatgaaccgttatgtacatctgggaac 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcttaaaaataccatggccaatgtgaacttgcccatgaaccgttatgtacatctgggaac 213

                       
Query: 541 tttaacgtggtt 552
           ||||||||||||
Sbjct: 212 tttaacgtggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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