BAC Information

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BAC

Clone NameMSMg01-487G06
Chromosome7 (Build37)
Map Location 94,836,504 - 94,837,173
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneOlfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G06.T7 (MSMg01no487_g06.b1)MSMg01-487G06.TJ (MSMg01no487_g06.g1)
ACCAG566366AG566367
length733749
length of high quality
(start - end)
654 (80 - 733)670 (80 - 749)
definitionCHROMAT_FILE: MSMg01no487_g06.b1 PHD_FILE: MSMg01no487_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:59 2005CHROMAT_FILE: MSMg01no487_g06.g1 PHD_FILE: MSMg01no487_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTNTGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCTCCCCTGAGCCCCATTTTTTAATGGGTTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCCGATTTGGGATAGTTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGC
AATTTTATAAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTTTCCATATCTTCGAGGCTTT
TCCCTACTTTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGT
TCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATC
AATTCGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAG
ATTAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATT
CCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCA
CAATTGCTCTGTAGTACAGTTTTAGGTCCAGCATGGTGATTCCACCAGAG
GTTCTTTTATTCTTGAGAAGATTTTTGCTATCC
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTACTTAGAAGAAAAA
TCCTTACTAACTGTTCAAAATTAGCCAGATTTTTGTCTGGAAGATCTGCT
TCAAGCTGGGCTCTGAATCTGTTTTATATGGTCCCCGAGTGATCCCACAG
ATCAGTGTGCCCTGATTGTGTTGTGTTTCCTTCTATCTCAGGACTGACTC
AGCCATTTCTGTTCAAGGAGACCTAGCTCTCAGTATTAAAAATCAACCAT
TTGGGCACTCACTCTACCCTCTCCATTACTCATGTATCATTGTATGTATG
CCTTTTCAAAAATGTGGGAGGACAAATACATGTGCCTGTATTCACCTGTT
TATTTGTATATTTTAGACATGTCTGTATCTTCCTGAATTGTTGTTCATAA
TGACATTTTAATTACATTCAGCAAAGTCTTCTCGTGGTCTTAAGTCACAT
ATATGAGTAATGCAATATGAAAATATATTTTGAGTTCTTCAATGAACTTC
CTTGCTGGTTCATCACCTTCTCTATGCCATTAAACTCTTAAGCATAAATT
TGAGATCCATGGTTTCTTCTATACTGGTATGTGGTGTGAAAACTCAAGTA
AAGGAAAGTAATAAGATAAGAGAAAGGAAAATTTCATGAAGAAACATGTA
GAAAAAAATGCATTTTGAAATTTTAGCCTTAGAATCCTATCGACAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g06.g1 MSMg01no487_g06.g1 CHROMAT_FILE:
MSMg01no487_g06.g1 PHD_FILE: MSMg01no487_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:59 2005
         (670 letters)



>mm_chr7_94836304_94837373
          Length = 1070

 Score = 1280 bits (662), Expect = 0.0
 Identities = 668/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattttacttagaagaaaaatccttactaactgttcaaaattagccagatttttgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattttacttagaagaaaaatccttactaactgttcaaaattagccagatttttgtctg 260

                                                                       
Query: 61  gaagatctgcttcaagctgggctctgaatctgttttatatggtccccgagtgatcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagatctgcttcaagctgggctctgaatctgttttatatggtccccgagtgatcccaca 320

                                                                       
Query: 121 gatcagtgtgccctgattgtgttgtgtttccttctatctcaggactgactcagccatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcagtgtgccctgattgtgttgtgtttccttctatctcaggactgactcagccatttc 380

                                                                       
Query: 181 tgttcaaggagacctagctctcagtattaaaaatcaaccatttgggcactcactctaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcaaggagacctagctctcagtattaaaaatcaaccatttgggcactcactctaccc 440

                                                                       
Query: 241 tctccattactcatgtatcattgtatgtatgccttttcaaaaatgtgggaggacaaatac 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccatgactcatgtatcattgtatgtatgccttttcaaaaatgtgggaggacaaatac 500

                                                                       
Query: 301 atgtgcctgtattcacctgtttatttgtatattttagacatgtctgtatcttcctgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtgcctgtattcacctgtttatttgtatattttagacatgtctgtatcttcctgaatt 560

                                                                       
Query: 361 gttgttcataatgacattttaattacattcagcaaagtcttctcgtggtcttaagtcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgttcataatgacattttaattacattcagcaaagtcttctcgtggtcttaagtcaca 620

                                                                       
Query: 421 tatatgagtaatgcaatatgaaaatatattttgagttcttcaatgaacttccttgctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatgagtaatgcaatatgaaaatatattttgagttcttcaatgaacttccttgctggt 680

                                                                       
Query: 481 tcatcaccttctctatgccattaaactcttaagcataaatttgagatccatggtttcttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatcaccttctctatgccattaaactcttaagcataaatttgagatccatggtttcttc 740

                                                                       
Query: 541 tatactggtatgtggtgtgaaaactcaagtaaaggaaagtaataagataagagaaaggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatactggtatgtggtgtgaaaactcaagtaaaggaaagtaataagataagagaaaggaa 800

                                                                       
Query: 601 aatttcatgaagaaacatgtagaaaaaaatgcattttgaaattttagccttagaatccta 660
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 aatttcatgaagaaacatgtagaaaaaaatccattttgaaattttagccttagaatccta 860

                     
Query: 661 tcgacaagca 670
           ||||||||||
Sbjct: 861 tcgacaagca 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)