Query= MSMg01no487_i03.b1 MSMg01no487_i03.b1 CHROMAT_FILE:
MSMg01no487_i03.b1 PHD_FILE: MSMg01no487_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:08 2005
(556 letters)
>mm_chr7_60988497_60989455
Length = 959
Score = 855 bits (442), Expect = 0.0
Identities = 489/510 (95%), Gaps = 11/510 (2%)
Strand = Plus / Minus
Query: 54 agaagatggcctagtcagccatcattgggaagagaggccccgtggtcttgcaaactttat 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 agaagatggcctagtcagccatcattgggaagagaggccccgtggtcttgcaaactttat 900
Query: 114 atgccctagtacaggggaatgccagggccaagaaatgtgagtgggtgggtaagggagcag 173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 899 atgccctagtacaggggaatgccagggccaagaagtgtgagtgggtgggtaagggagcag 840
Query: 174 ggcagggggagtgtatagggagatttcaggatagcctttgaaatgtaaataaagaaaata 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggcagggggagtgtatagggagatttcaggatagcctttgaaatgtaaataaagaaaata 780
Query: 234 tctaataaaaaaaatttttt----aatttacctccttt---tggtttttgtacctatcta 286
|||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct: 779 tctaataaaaaaaa----gtaaggaatttacctcctttctatggtttttgtacctatcta 724
Query: 287 ctaaaatactacagtggaaacatatgggctgtgaactcagatcacatggtttcatacacc 346
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 723 ctaaaatactacagtggaaacatatgggctgtgaactcagatcacatgctttcataaatc 664
Query: 347 cacttcaagtgataatcttttctttcatttaaaaattttaacagtttgcttttgtttcat 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gacttcaagtgataatcttttctttcatttaaaaattttaacagtttgcttttgtttcat 604
Query: 407 gcttttgaaaaacgaagaccttgtacatacagttttgaatgaaattctctggtctgtaag 466
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 603 gcttttgaaaaacaaagacattgtatatacagttttgaatgaaattctctggtctgtaag 544
Query: 467 catctatgatagtaccaattatgtttttggagagtgttttacttggtgcttggagttgag 526
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 catctatgatagtaccaattatgtttttggagagtgttttacttggtgtttggagttgag 484
Query: 527 tcatccaggtaaactagcaaggtgagcaaa 556
||||||||||||||||||||||||||||||
Sbjct: 483 tcatccaggtaaactagcaaggtgagcaaa 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 959
Length adjustment: 10
Effective length of query: 546
Effective length of database: 949
Effective search space: 518154
Effective search space used: 518154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_i03.g1 MSMg01no487_i03.g1 CHROMAT_FILE:
MSMg01no487_i03.g1 PHD_FILE: MSMg01no487_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:08 2005
(654 letters)
>mm_chr7_60805931_60806984
Length = 1054
Score = 719 bits (372), Expect = 0.0
Identities = 547/642 (85%), Gaps = 64/642 (9%)
Strand = Plus / Plus
Query: 18 agctagtttcttgttttgctttgaggatgacaattaagtgatgaatctaagaagagacat 77
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 agctagtttcctgtcttgctttgaggatgacaattaagtgatgaatctaataagagacat 331
Query: 78 tgacctttggacttttaacattgctgagactgttatagactatggggactttggaagttc 137
|||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct: 332 tgacctttggacttttaacatttttgagactgctatagactat-----------aa---- 376
Query: 138 gactaaatttttttaattatgctatggctaagtac--cc-cccccataatcttttgtttg 194
||| ||||||| |||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 377 ---taatttttttttattatgctatggctaagtactacctcccccataatcttgtgtttg 433
Query: 195 aataagcctatgggggccagggagtggaatgtggtggtttcactatgcttgttccaggga 254
||||| |||||||||||||||||||
Sbjct: 434 aataaacctatgggggccagggagt----------------------------------- 458
Query: 255 gttgtggtgttcccttggtggagggggtgtaaccttg-ttgaggaacat-tgtcactgtg 312
||||||||||||||||||| ||||||||||||| |||||||| | ||||| ||||
Sbjct: 459 ----tggtgttcccttggtggagcgggtgtaaccttgtttgaggaa-gtgtgtcagtgtg 513
Query: 313 gaggtgagcaatgaaatccatctcctatccgcatgatagccatccttctgaacttagaac 372
|||||| ||||||||||| |||||| ||| |||||||||||||| ||||||||||||||
Sbjct: 514 taggtgaacaatgaaatccttctcctctccacatgatagccatccctctgaacttagaac 573
Query: 373 tctcagctcctcctgcaccatgtctgcctggatgctgccattctgctgccttgatgatag 432
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 574 tctcagctcctcctgcaccatgtctgcctggatgctgccattttgctgccttgatgataa 633
Query: 433 tagactgaacctctgactctttaagccagcacaaattaaatgtccttataataattgcct 492
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 634 tagactgaacctctgaatctttaagccagcacaaattcaatgtccttataattattgcct 693
Query: 493 tggtcatagtgtctgatcacagcaggaaaaccctaagacaaactgtaaagaaataatcat 552
|||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 694 tggtcatagtgtttgatcacagcaggaaatcc-taagacaaactataaagaaataatcat 752
Query: 553 ctaatcgtgatgtaatgactcagtcatcatgagaagtcaatagagaatgatatgtaccta 612
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 753 ctaatcgtgatgtaacaactcagtcatcatgagaagtcaatagagaacgatatgtaccta 812
Query: 613 gatcacactgcaaatcattctgccatatgaagagtctgactt 654
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 813 gatcacactgcaaatcgttctgccatatgaagagtctgactt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
