Query= MSMg01no487_m11.b1 MSMg01no487_m11.b1 CHROMAT_FILE:
MSMg01no487_m11.b1 PHD_FILE: MSMg01no487_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:29 2005
(225 letters)
>mm_chr7_100125627_100126251
Length = 625
Score = 406 bits (210), Expect = e-118
Identities = 219/222 (98%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 1 ctgagaaagaattttcctgagtacctagcatggtggcagacattcacattttaaaaaata 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 385 ctgagaaagaattttcctgagtacctagcacggtggcagacattcacattttaaataata 326
Query: 61 tgatattctctacttcaccaaaattcagtctgcattttttataaaaatttgacattttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatattctctacttcaccaaaattcagtctgcattttttataaaaatttgacattttct 266
Query: 121 acttacagtcctgacacaccaagaagaatatcatctttccacgtgcactaactttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttacagtcctgacacaccaagaagaatatcatctttccacgtgcactaactttttttt 206
Query: 181 tttttttt-ggtttggttggttggttggtttggtttggtttg 221
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 tttttttttggtttggttggttggttggtttggtttggtttg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no487_m11.g1 MSMg01no487_m11.g1 CHROMAT_FILE:
MSMg01no487_m11.g1 PHD_FILE: MSMg01no487_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:29 2005
(488 letters)
>mm_chr7_99950722_99951609
Length = 888
Score = 847 bits (438), Expect = 0.0
Identities = 469/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 1 agagtcatttgaatgtggatggtcactggcactgtacttgtgtacccgcccacctgcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agagtcatttgaatgtggatggtcactggcactgtacttgtgtacccgcccacctgcatt 260
Query: 61 tcttttaccacccttgagccccatgagagtttaaggatatgcatcttttctcagtaagcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tcttttaccacccttgagccccatgagagtttaaggatatgcatcttttctcagtaagtc 320
Query: 121 ctgttgattcaatgagtcatcttttgaagaaaacctgggagattcctaaatggataacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttgattcaatgagtcatcttttgaagaaaacctgggagattcctaaatggataacca 380
Query: 181 agaaaataagttctttctcatcttaatgttaccagtgaaatcagggtttccttctggatt 240
||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 381 agaaaataagttcttcctcatcttaatgttaccagcgaaatcagggttcccttctggatt 440
Query: 241 cttaatactggtaagaaaacaattttgaaatggacttgggggaactggagagatggctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaatactggtaagaaaacaattttgaaatggacttgggggaactggagagatggctca 500
Query: 301 gtggttaagagcaccgattgctcttccagaggtactgagttcaattcccagaaaccacat 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggttaagagcaccaattgctcttccagaggtactgagttcaattcccagaaaccacat 560
Query: 361 ggtggctcacaactatctgtaacgggatctaatgccctcttcgg--atgtgtctgaagac 418
||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ggtggctcacagccatcggtaacgggatctaatgccctcttcggggatgtgtctgaagac 620
Query: 419 agctactgtgtactcatataaataaatctaaaaaggaaaaagaaaaaagaaatggatttg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctactgtgtactcatataaataaatctaaaaaggaaaaagaaaaaagaaatggatttg 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
