BAC Information

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BAC

Clone NameMSMg01-488A18
Chromosome7 (Build37)
Map Location 52,024,529 - 52,025,161
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488A18.T7 (MSMg01no488_a18.b1)MSMg01-488A18.TJ (MSMg01no488_a18.g1)
ACCAG566864AG566865
length695675
length of high quality
(start - end)		645 (20 - 664)630 (46 - 675)
definitionCHROMAT_FILE: MSMg01no488_a18.b1 PHD_FILE: MSMg01no488_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:50 2005CHROMAT_FILE: MSMg01no488_a18.g1 PHD_FILE: MSMg01no488_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATTCCGAGAGGATCCGCGGAATTCCTTGGTCACCCATATTCA
CCCTGATCTGCGTAGACACTGCCACCTCTCCCCAGGGTAAGAACATGTAT
CATGTGACTTCATTTGTCTCATGTATCACAGGCTGGCCTTGAACTCAATA
TGTAGCTCAAGATGACCTTGAGAGATGAACTTCTGATGGTCTTGTCTTCA
CCTCCCAAGTGCACTGCTGGGTCGAAACCAGGGTCTTTGGTACACTAGGT
AAGCACTCCACCAATTGGGCCACATCTCCAATCCCAACTTCATTTCTTAT
ATTCTCTATAGATATACTGAATCATTCTGCTCACTTCATTTCCTCCAGGC
CTTTGAACTTCCTGTTCTTTACATCTGGCTATTCTACCCCTGTGAGGTCT
TATTCACACATGTCACATGTCACCTCCTTAGTCCTTCCCAACATCCAGTC
TGGATGAGGCTCTCCATTCCTGTATCTTCATTCTTTTTCTTCATAGCCCT
CAACAGAGTCTGGCATTATCTTTGTCTGGTTGTATGCATAGTAGTTTTCT
TAGGCCAGTAATATGAGCCCTGTGAGGACCAGGACCTTCAGGAAACGTAC
CAGCACCTTACTACAAATGCCTAGCAATGTGCCTGGCACAAAGGCCATGC
TCAATAATCACCTGTGTAATAAACAGCAAACAAGGCATAGCTGAG

GCCTGTTCGACAAAGTTAGGTGACCTATAGATTTCACGCAGGATTCACTT
GAGGCTGCAGAAGGCTGGGGCTCTCTTGAGTGGCTGTCTACCCATCCCTT
CTGCTCCTCACAGGGGTCTGAACTCCTCCCCTACCAGAGGAGAGCTTGGG
CTAGTATAGGGTGCTGCAGACCCTCACACTCACTTCTGCTTCTGCCTAGT
TATCTTTTCGGTGTTGGGAAGGCAATTTGTCCATGGCAGGGACCCATAAA
GCCACTTGAGCATACAGTAGCCCAAGGTCTGGAGATTTCTGCGGCGGGAG
GGTCCTGGGGAGAAAGGGGAGAGGTGGTAGCTTAGTCCAGCTGTCAGACC
TCTTCATGGGTCTACCCCCAGCTCTCCACTCCAGCCGTGAAAACCATCTT
AGCCATCACTGCTCAGTCCCTGGCTTCCCTTATATGGCCCCACGACTCTC
ACATACTCTGCTGCTGTCACCCACTCCAGTATCCCATTGCCCTGACTGTT
CATCCTCTGTTAATACAGTTATCAAAGGAGCCCTGGGTACCTGTGCACCA
ACTCCCAAACCGTTCATTTCCCACATAGTTAAGTGGGAAACGATTGCGGT
GCTGAGTTACCTCATCATAGAGGAGAGAGAACAGGGCACTTTCCTTTTGC
CTCCTAACTCACTCTTCAGACAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_a18.g1 MSMg01no488_a18.g1 CHROMAT_FILE:
MSMg01no488_a18.g1 PHD_FILE: MSMg01no488_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:50 2005
         (630 letters)



>mm_chr7_52024460_52025487
          Length = 1028

 Score = 1048 bits (542), Expect = 0.0
 Identities = 609/644 (94%), Gaps = 25/644 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgaggctgcagaaggctggggctctcttgagtggctgtctacccatcccttctgct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 702 cacttgaggctgcagaaggctggggctctcctgagtggctgtctacccatcccttctgct 643

                                                                       
Query: 61  cctcacaggggtctgaactcctcccctaccagaggagagcttgggctagtatagggtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 642 cctcacaggggtctgaactcctcccctaccagaggagagcttgggctagtacagggtgct 583

                                                                       
Query: 121 gcagaccctcacactcacttctgcttctgcctagttatcttttcggtgttgggaaggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gcagaccctcacactcacttctgcttctgcctagttatcttttcggtgttgggaaggcaa 523

                                                                       
Query: 181 tttgtccatggcagggacccataaagccacttgagcatacagtagcccaaggtctggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttgtccatggcagggacccataaagccacttgagcatacagtagcccaaggtctggaga 463

                                                                       
Query: 241 tttctgcggcgggagggtcctggggagaaaggggagaggtggtagcttagtccagctgtc 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcgctgcggcgggagggtcctggggagaaaggggagaggtggtagcttagtccagctgtc 403

                                                                       
Query: 301 agacctcttcatgggtctacccccagctctccactccagccgtgaaaaccatcttagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agacctcttcatgggtctacccccagctctccactccagccgtgaaaaccatcttagcca 343

                                                                       
Query: 361 tcactgctcagtccctggcttcccttatatggccccacgactctcacatactctgctgct 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 342 tcactgctcagtccctggcttcccttatatgg-cccacgactctcacatactctgctgct 284

                                                                       
Query: 421 gtcacccactccagtatcccattgccctgactgttcatcctctgttaatacagttatcaa 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 283 gtcacccactccagtatcccattgccctgtctgttcatcctctgttaatacagttat-aa 225

                                                                       
Query: 481 aggagccctgggtacctgtgca-cca------------a-ctcccaaaccgttcatttcc 526
           ||||||||||||| |||||||| |||            | |||||||||||||       
Sbjct: 224 aggagccctgggtgcctgtgcacccagcccggcctctcatctcccaaaccgtt------- 172

                                                                       
Query: 527 cacatagttaagtgggaaacgattgcggtgctgagttacctcatcatagaggagagagaa 586
             ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 171 --catagttaagtgggaaaagattgtggtgctgagctacctcatcatagaggagagagaa 114

                                                       
Query: 587 cagggcactttccttttgcctcctaactcactcttcagacagct 630
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caggtcactttccttttgcctcctaactcactcttcagacagct 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space:   631160
Effective search space used:   631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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