BAC Information

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BAC

Clone NameMSMg01-488I09
Chromosome7 (Build37)
Map Location 24,538,806 - 24,539,373
singlet/doubletsinglet
Overlap geneV1rd22
Upstream geneEG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934
Downstream geneLOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I09.T7 (MSMg01no488_i09.b1)MSMg01-488I09.TJ (MSMg01no488_i09.g1)
ACCAG567226AG567227
length674730
length of high quality
(start - end)
570 (59 - 628)272 (74 - 345)
definitionCHROMAT_FILE: MSMg01no488_i09.b1 PHD_FILE: MSMg01no488_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005CHROMAT_FILE: MSMg01no488_i09.g1 PHD_FILE: MSMg01no488_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AACACTGACTGGAGCTGATGTGNGNGAANNCNCCAGGTACGGTACCGAGA
GTTTNAANGCAGTTGTGTCTTCTTACCCAGGAAAATACTACATACAACTT
GCAAAGCACAGACAATTAACAAGAGTTTTGAAGACAATACTGTCTCACTT
GATTTTCACTCAATTTTTCACCCAAGTCTTTCTATGTCTGCTCTTAATAA
AGCCCTGAAAACCACTGAGGAAGTGGTTCTTCAAATCATCTTGCTTTGCC
AGGTTGGTATTGCAGCTGTGGCCAACATTCTTCTGCTTGTCCANATTTTA
TCTCCTAACTTTGCTGGCCCTCAACTGAGACCAAAACATGTCATTCTTGC
CCACATTACTGTGGGCAATCTCTTGATTATCCTCCTCACTGGGTTTCCAA
GCAATATGACAGTTTTTGTTCCAAGGAATACTCTAAATGACCTCAACTGT
AAGCTTGAGTACTTCATTCGCCTGGTGGCTCGAAGTGCAAACATGTGTAC
TACTTGTATCCTGAGCACTTACCAGTTTATCGTTCTTGTTCTTGGTAAAT
GGAGTAGAGTGATACTCAGAGGAAATACCTCCACATTTGTGCACTATTCT
TGTAATAGTTGTTGGATTATCAGTGTCGTAAATAATGTCTACATCCCTAT
AAAAATCAGTGGCCCATGGAACAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACAAAAAAAAAGCCCTGGGCTCCAGGTTAGTTGAGACTC
CTGGTTTTTCTACAAGATCACCTTCCCCTTCATCTTCTTCATTCCTTCCC
CAAATCCAACCACAGGAGTCAATGACTTTAGTGCAATGACTGGGTGTAAG
TATCTGCATCAGTATCAGGTGCTGCTAGAGCCTCTCAGAGGACAGCCATG
ATAGACTCCGGTCTTCAGTCTCTTCCCATTTTTGTCTGTGCAGNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAG
GAACATTCCACCTGGGGTATGCTGCCTGGTTTGGGGTTCAATGTCTGAAA
AATCTCAGGGGCCCGGGCTAGTTGAAACTGATTGGCATCCTATGGAAACA
CCCTCCTTCTCAGCTTCTTCAAGTCTTTCCCTAATTCAACCACGGGGGTC
CCCCACTTCGGTCCATTGGTTGAATAAAGTCATCTGCATGAATCTCAACC
TGCTATTTTTTGAACCTTTCAAAAGAAAACAATGGTAGGCTTTTGTTTGC
AAGCACACCTTAACTTCAATAATAATGTCAGGCCTTGGACCCTCCCTTTT
AAATGGATCCCAAGTTGGGGAAGACACTGTATCTCCTTTCCTTCAGGCTT
TATATCCACATTTCCCCTGTAGAACTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i09.b1 MSMg01no488_i09.b1 CHROMAT_FILE:
MSMg01no488_i09.b1 PHD_FILE: MSMg01no488_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:28 2005
         (570 letters)



>mm_chr7_24538605_24539574
          Length = 970

 Score = 1023 bits (529), Expect = 0.0
 Identities = 558/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   cagttgtgtcttcttacccaggaaaatactacatacaacttgcaaagcacagacaattaa 61
           |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 202 cagtggtgtcttcttacccaggaaaatactacaaacaatttgcaaagcacagacaattaa 261

                                                                       
Query: 62  caagagttttgaagacaatactgtctcacttgattttcactcaatttttcacccaagtct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagagttttgaagacaatactgtctcacttgattttcactcaatttttcacccaagtct 321

                                                                       
Query: 122 ttctatgtctgctcttaataaagccctgaaaaccactgaggaagtggttcttcaaatcat 181
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 322 ttctatgtctgctcttaataaagccctgaaaaccactgaggaagtggcccttcaaatcat 381

                                                                       
Query: 182 cttgctttgccaggttggtattgcagctgtggccaacattcttctgcttgtccanatttt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 382 cttgctttgccaggttggtattgcagctgtggccaacattcttctgcttgtccataattt 441

                                                                       
Query: 242 atctcctaactttgctggccctcaactgagaccaaaacatgtcattcttgcccacattac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atctcctaactttgctggccctcaactgagaccaaaacatgtcattcttgcccacattac 501

                                                                       
Query: 302 tgtgggcaatctcttgattatcctcctcactgggtttccaagcaatatgacagtttttgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtgggcaatctcttgattatcctcctcactgggtttccaagcaatatgacagtttttgt 561

                                                                       
Query: 362 tccaaggaatactctaaatgacctcaactgtaagcttgagtacttcattcgcctggtggc 421
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tccaaggaatcctctaaatgacctcaactgtaagcttgagtacttcattcgcctggtggc 621

                                                                       
Query: 422 tcgaagtgcaaacatgtgtactacttgtatcctgagcacttaccagtttatcgttcttgt 481
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 622 tcgaagtgcaaacatgtgtactacttgtatcctgagctcttaccagtttatcgttcttgt 681

                                                                       
Query: 482 tcttggtaaatggagtagagtgatactcagaggaaatacctccacatttgtgcactattc 541
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcctggtaaatggagtagagtgatactcagaggaaatacctccacatttgtgcactattc 741

                                       
Query: 542 ttgtaatagttgttggattatcagtgtc 569
           ||||||||||||||||||||||||||||
Sbjct: 742 ttgtaatagttgttggattatcagtgtc 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)