Query= MSMg01no488_n23.b1 MSMg01no488_n23.b1 CHROMAT_FILE:
MSMg01no488_n23.b1 PHD_FILE: MSMg01no488_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
(620 letters)
>mm_chr7_26453869_26454888
Length = 1020
Score = 980 bits (507), Expect = 0.0
Identities = 536/547 (97%), Gaps = 6/547 (1%)
Strand = Plus / Minus
Query: 78 atcaactgagttaaaacagtggcattcgatagtggcacctggaaca---cccccc-cccc 133
||||||||||||||||| | ||||||| |||||||||||||||||| |||||| ||||
Sbjct: 1010 atcaactgagttaaaac-gcggcattccatagtggcacctggaacaccgcccccctcccc 952
Query: 134 ccgcgccagggtttctttgtgtagccctggctgtcctggaactcaccctgtagaccaggc 193
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 951 ccg-gccagggtttctttgtgtagccttggctgtcctggaactcaccctgtagaccaggc 893
Query: 194 tgtccttaagcacagaagagttctgcttgcctctgcctcccagtgctgggattaaaggtg 253
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tggccttaagcacagaagagttctgcttgcctctgcctcccagtgctgggattaaaggtg 833
Query: 254 cactctaccacctatgtaatacattctttcattaaatacccagcagctacgttgccctaa 313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 832 cactctaccacctatgtaatacattctttcattaaatacccagcaactacgttgccctaa 773
Query: 314 ccctggtttgggaatacaaatggattagtcatactaggtgggggcagggagggggagagc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ccctggtttgggaatacaaatggattagtcatactaggtgggggcagggagggggagagc 713
Query: 374 cacaggaagcaggacggagggtgaggtgggcactttggttaccactgcccactgcctcta 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cacaggaagcaggacggagggtgaggtgggcactttggttaccactgcccactgcctcta 653
Query: 434 cagaccaacaaggcttgggccaagggggacgtccaaggggcaggggctgcctcccgccga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cagaccaacaaggcttgggccaagggggacgtccaaggggcaggggctgcctcccgccga 593
Query: 494 gctttcctgctgggggtccttgccgtggggctgggcctgtgcacatatgcagctgccctg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gctttcctgctgggggtccttgccgtggggctgggcctgtgcacatatgcagctgccctg 533
Query: 554 gtgaccttggctgcctaccttgcctcccgagacccgccctagttgcccttcagcccccac 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gtgaccttggctgcctaccttgcctcccgagacccgccctagttgcccttcagcccccac 473
Query: 614 tgtgaat 620
|||||||
Sbjct: 472 tgtgaat 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_n23.g1 MSMg01no488_n23.g1 CHROMAT_FILE:
MSMg01no488_n23.g1 PHD_FILE: MSMg01no488_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:55 2005
(545 letters)
>mm_chr7_26402063_26403007
Length = 945
Score = 905 bits (468), Expect = 0.0
Identities = 524/547 (95%), Gaps = 9/547 (1%)
Strand = Plus / Plus
Query: 5 atagccagagctacacagaaataccctggtcttgaacccttcctgc------nnaanaaa 58
||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 202 atagccagagctacacagaaataccct-gtcttgaacccttcctgcaaaaaa--aaaaaa 258
Query: 59 aaaaaaaaaaaaaaaaaaaaagggagccttaagcttggccttgaggtacacatctatgat 118
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaaaaaaaaaaaaaaaaaaaggagccttaagcttggccttgaggtacacatctatgat 318
Query: 119 cccagctctgaactataaagcaatataggaaagggggtggggctcaaatcggaggggagg 178
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 319 cccagctctgaactataaagcaatataggaaagggggtggggctcagagcggaggggagg 378
Query: 179 agaaggtagaggcttcttaaagtaatagaatgtggtggtttgaaggaaaatgtcccccat 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaaggtaaaggcttcttaaagtaatagaatgtggtggtttgaaggaaaatgtcccccat 438
Query: 239 aggctcatattgttgggtggtcggtggtggactggggaggtttagggggaccctcagtgg 298
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggctcagacagttgggtggtcggtggtggactggggaggtttagggggaccctcagtgg 498
Query: 299 aggaaggacctcgttggaggtgagctttgggagtttaaggcccacccatttcagtttgct 358
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 aggaaggacctcgttggaggtgagctttgggagtttaaggcccagtcatttcagtttgct 558
Query: 359 ttctctgcccctggcttcagctgaagatggaagctctccgcttcttgttcctgacaccat 418
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 ttctctgcctctggcttcagctgaagatggaagctctctgcttcttgttcctgacaccat 618
Query: 419 ccctgctgtttgctatgatttgtgcccactatgatggctgcttagccctctggaactgca 478
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 ccctgctgtttgctacgatttgtgcccactatgatggccgcttagccctctggaactgca 678
Query: 479 agccaaaacaacctcccttctgtaggttgccttgagtcacagcattttatcacagcaaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agccaaaacaacctcccttctgtaggttgccttgagtcacagcattttatcacagcaaca 738
Query: 539 ggaaagt 545
|||||||
Sbjct: 739 ggaaagt 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
