BAC Information

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BAC

Clone NameMSMg01-488P20
Chromosome7 (Build37)
Map Location 14,184,337 - 14,185,014
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik
Downstream geneEG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P20.T7 (MSMg01no488_p20.b1)MSMg01-488P20.TJ (MSMg01no488_p20.g1)
ACCAG567581AG567582
length760785
length of high quality
(start - end)		677 (72 - 748)134 (75 - 208)
definitionCHROMAT_FILE: MSMg01no488_p20.b1 PHD_FILE: MSMg01no488_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:03 2005CHROMAT_FILE: MSMg01no488_p20.g1 PHD_FILE: MSMg01no488_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACACGAGGCGCGGA
ATTCCTAAATTTTCTTTGAGATTAATTTGCTTTTTTTGTAGTGGGACTGC
TATTAGGTCCTTTTATAATAGTAAAAACTGCAATGAGAACTCTGCCAGTC
TCCCAAGTGTCACAAGTTAACTTCTTTTAGATAGTAACCAGACTTTCTCC
TACTCAGAGCACATTCCAAGAGGTTGTAAAACAATTAATCAAAGGTCATA
AAAATCAAACTAATGACTTTTTATAGGTTAGAGGACAGAAGATAAAATAT
TGACTAGGTTTCTCTATACTCTTACTTCACTGATAACTTATGTTTTTAAA
CCTTCCATGAACCTGTGAATCTGTGACAGGTGATGGACGTTTACCCAGAT
AATTAAGACTATTGGATTTGCATGTAAATGTTCTCTGTTGAAAACTCCTA
TTTCAATCTATGATACGATTCTTTTGTGTGAACTTGTGAAGAACTTTGTA
ACATGTGACCATGTATTATTCTGAGAGATATATAAGTACTCAGGACAAAG
AGATGAGAGGCAAATACAGAAGAATTTGCCCTTAGAAGAATTTTTTCCCT
TACCAGAATTTTTGCCCCTCCCCATAACCCTATCATACTTAGGATCTTTC
TGCTTTATTCCTAAGTTTATTTCATAGGAAAGTTTTTACAACTTAGTAAT
AAATGCTATAATCACTTTTCTAAGTGTCCCTTTCTCTTCCTGCTATTTAC
AAATAGGAGG

CGATGAAGTGNGTAGGCCTGGNGGCCGCCTGGTTCTCAACATGGAGGTGA
CCTATAGAAGTACATGCGGAATTCCAGGTTTGTGTTCATTCAGAGATGAT
GCACCTAACACAAGAGACTGGCAGCCCCAGGGAGTTTAGTGGTCAGGTGG
GGTGGAAGGTGGGGGCATCCATGTGGAGTTAGGATGGGGAGGAGATTTGG
GATTTGNAACANTCCANNTGTGNACTGGNATAGGCTGATAAATATATATT
TTTTTTACATAATTAATTTTTTATTAGAAATAATGATATAAATTATGTCT
GATAGAGAGAAGACGGTATTCCATCGCTTTTCCGACAGGGATGGACCCAC
CGGGGCCGTTTCTTTTGTGTTTCTTATTTCTTGTGTGGTGCTCCTGATTT
TTATTTGAGTGTTGCCCCCCCCCCTTTTTTTGCACTTGTTTTTATGACTA
TCGCGCTCTCTATCTGTCTTTTTACGATTCTCCTTTTGCTTCTTTCATAC
ATCATTTTTTTCTTTTGCTTTTGCCTGTTTTATTCTTCTATACCTTTTTC
TCTGCGCTCTTTTCATTTTTCGCCCTTTTTTTCTTCACATTTGCTTTTTT
TTTTTTCCTTTTTGTGCTCCCCTTTTCTCCCCTTGTTCCCCCTACCCTAT
ACACACTCCTTTTTTTTTTTTTCCTATCCATCCCCCCCACTCTTGTTTTT
CTTTTTTTCTTATTCCCGTTTTGCACCTTTTTTATATTCGCTTATGCTAC
TTACCCTCCTTTTATTATCATTTCGTCTCGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p20.b1 MSMg01no488_p20.b1 CHROMAT_FILE:
MSMg01no488_p20.b1 PHD_FILE: MSMg01no488_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:03 2005
         (677 letters)



>mm_chr7_14184137_14185214
          Length = 1078

 Score =  725 bits (375), Expect = 0.0
 Identities = 606/693 (87%), Gaps = 31/693 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatttgctttttttgtagtgggactgctattaggtccttttataatagtaaaaactgc 60
           ||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 201 ttaatatgctttttttgtagtgggactgctattaggtcattttctgatagtaaaaactgc 260

                                                                       
Query: 61  aatgagaactctgccagtctcccaagtgtcacaagttaacttctt-ttagatagtaacca 119
           |||||||| |||| |||||||  ||||||||||||||||||| || ||||||||||||||
Sbjct: 261 aatgagaagtctgtcagtctcggaagtgtcacaagttaactt-ttcttagatagtaacca 319

                                                                       
Query: 120 gactttctcctactcagagcacattccaagaggttgtaaaacaattaatcaaaggtcata 179
            |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 tactttctcctactcagagcatattccaagaggttgtgaaacaattaatcaaaggtcata 379

                                                                       
Query: 180 aaaatcaaactaatgactttttataggttagaggacagaagataaaatattgactaggtt 239
           ||||  ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 380 aaaagaaaactaatgacattttgtaggttagaggacagaagataaaatattgactgggtt 439

                                                                       
Query: 240 tctctatactctta---cttcactgataactta----tgtttttaaaccttccatgaacc 292
           | |||||||    |   ||||||| |||| |||    || ||||||||||||||  ||||
Sbjct: 440 tttctatac----aaaacttcactaataagttagttatggttttaaaccttccaaaaacc 495

                                                                       
Query: 293 tgtgaatctgtgacaggtgatggacgtttacccagataattaagactattggatttgcat 352
           ||||||| |||||| ||||||||| ||||| |||||||||||   || ||||||||||||
Sbjct: 496 tgtgaatttgtgactggtgatggatgtttagccagataattactcctgttggatttgcat 555

                                                                       
Query: 353 gtaaatgttctctgttgaaaactcctatttcaatctatgatacgat-tcttttgtgtgaa 411
           |||||  |||||||||||||||||||| |||||| ||||||| ||| | |||| | ||||
Sbjct: 556 gtaaacattctctgttgaaaactcctacttcaatttatgatatgatat-ttttctatgaa 614

                                                                       
Query: 412 cttgtgaagaactttgtaacatgtgaccatgtattattctgagagatatataagtactca 471
           |||| || |||||||||||||||||| ||||||||   |||| |||| |||||||||| |
Sbjct: 615 cttgcgatgaactttgtaacatgtgaacatgtatt---ctgaaagatgtataagtactga 671

                                                                       
Query: 472 ggacaaagagatgagaggcaaatacagaagaatttg-cccttagaagaattttttccctt 530
           ||||||||||||||| |||||||||| ||||||||  ||||||||||||||||| |||| 
Sbjct: 672 ggacaaagagatgaggggcaaatacaaaagaatttttcccttagaagaatttttcccct- 730

                                                                       
Query: 531 accagaatttttgcccct--ccccataaccctatcatacttaggatctttctgctttatt 588
           || ||||||||||| |||  |||||  |||||| |  ||||||||||||| ||||||  |
Sbjct: 731 actagaatttttgcgccttccccca--accctaccccacttaggatctttttgcttt--t 786

                                                                       
Query: 589 cc--taagttta--tttcataggaaagtttttacaacttagtaataaatgctataatcac 644
           ||  |||||| |  |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 787 cccctaagtt-agctttcataggaaagtttttacaacttagtaagaaatgctataatcac 845

                                            
Query: 645 ttttctaagtgtccctttctcttcctgctattt 677
           |||| ||| ||||||||||||||||||||||||
Sbjct: 846 ttttataaatgtccctttctcttcctgctattt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space:   712356
Effective search space used:   712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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