BAC Information

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BAC

Clone NameMSMg01-489G23
Chromosome7 (Build37)
Map Location 115,176,873 - 115,177,461
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478
Downstream geneOlfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489G23.T7 (MSMg01no489_g23.b1)MSMg01-489G23.TJ (MSMg01no489_g23.g1)
ACCAG567919AG567920
length782782
length of high quality
(start - end)		593 (51 - 643)527 (74 - 600)
definitionCHROMAT_FILE: MSMg01no489_g23.b1 PHD_FILE: MSMg01no489_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005CHROMAT_FILE: MSMg01no489_g23.g1 PHD_FILE: MSMg01no489_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGAGCTGTTTCTTATTTCGGGAGGTGAGATTTAGGAATTT
GTGAATTAATTGGTTTCCCATTATTTCTGATAGATATGTGTATATGTTCT
TCAAAATTGTGTTCATAAGCTATCACTTAAACAGTGTAAATGCAATTCAG
CATTCACTTAGCATCTTTCACTGTTTTAAATTTAAGTTTTTCATTAACTT
AAATGGAGTTAATTTAAATTATTGTGGCTAAATAGGCATAATTCAGTTTA
TCAATATTCCTCATTTGAACAACTATAATGTAAGAATCTGATATAGGTTT
AACAACATCTAAACTTAGCACTCAAACATAGTGTTAAAAAATTACTGTCA
TTGAAATAAGTTGGCATGAGAGTTCTATATCAAAATATCTTCTGGAAAAC
CTACTTTGTGTATTATTCAAACTCCAACAGCATTGCAGACAACTAGACAC
TTTGGATAATGGGTAGGATATAAAGGAAAGAATCTTGGGAGATGGGTCAA
CCTGGCCCCTACCTATGTAAACCTAGGTTCACTTTCTAACTGTCTAGTAT
CCTAATATATTCACTAATACAATGTTCTAAAAGTCACATTCTTTTCCAGG
AGGCTGCAGTTAAATATTATGTGAAGAAATGATTGTGTACAGCTAAATAT
ACAACATCACAATTTAGTTCTGAATATTCATGTCACATTTTGCATAAATA
GATTGACATTTTCAATGAANTAAGTAATGGNT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCATACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTCAAGAAGAATGAGACTGTAGTGTGGACACTATGCCCC
TCCTTAGATTGGGGAACAAACAACCATGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_g23.b1 MSMg01no489_g23.b1 CHROMAT_FILE:
MSMg01no489_g23.b1 PHD_FILE: MSMg01no489_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:40 2005
         (593 letters)



>mm_chr7_115176669_115177661
          Length = 993

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagctgtttcttatttcgggaggtgagatttaggaatttgtgaattaattggt 64
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattctgggctgattcttatttcgggaggtgagatttaggaatttgtgaattaattggt 734

                                                                       
Query: 65  ttcccattatttctgatagatatgtgtatatgttcttcaaaattgtgttcataagctatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttcccattatttctgatagatatgtgtatatgttcttcaaaattgtgttcataagctatc 674

                                                                       
Query: 125 acttaaacagtgtaaatgcaattcagcattcacttagcatctttcactgttttaaattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acttaaacagtgtaaatgcaattcagcattcacttagcatctttcactgttttaaattta 614

                                                                       
Query: 185 agtttttcattaacttaaatggagttaatttaaattattgtggctaaataggcataattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agtttttcattaacttaaatggagttaatttaaattattgtggctaaataggcataattc 554

                                                                       
Query: 245 agtttatcaatattcctcatttgaacaactataatgtaagaatctgatataggtttaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agtttatcaatattcctcatttgaacaactataatgtaagaatctgatataggtttaaca 494

                                                                       
Query: 305 acatctaaacttagcactcaaacatagtgttaaaaaattactgtcattgaaataagttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acatctaaacttagcactcaaacatagtgttaaaaaattactgtcattgaaataagttgg 434

                                                                       
Query: 365 catgagagttctatatcaaaatatcttctggaaaacctactttgtgtattattcaaactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catgagagttctatatcaaaatatcttctggaaaacctactttgtgtattattcaaactc 374

                                                                       
Query: 425 caacagcattgcagacaactagacactttggataatgggtaggatataaaggaaagaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caacagcattgcagacaactagacactttggataatgggtaggatataaaggaaagaatc 314

                                                                       
Query: 485 ttgggagatgggtcaacctggcccctacctatgtaaacctaggttcactttctaactgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgggagatgggtcaacctggcccctacctatgtaaacctaggttcactttctaactgtc 254

                                                            
Query: 545 tagtatcctaatatattcactaatacaatgttctaaaagtcacattctt 593
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagtatcctaatatattcactaatacaatgttctaaaagtcacattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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