Query= MSMg01no489_n22.b1 MSMg01no489_n22.b1 CHROMAT_FILE:
MSMg01no489_n22.b1 PHD_FILE: MSMg01no489_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:16 2005
(576 letters)
>mm_chr7_105609412_105610387
Length = 976
Score = 853 bits (441), Expect = 0.0
Identities = 450/453 (99%), Gaps = 1/453 (0%)
Strand = Plus / Minus
Query: 3 gaattcatcatgtctggggagaggaggacctgcacgccatgctcaggctctgagcctgaa 62
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattcatcaagactggggagaggaggacctgcacgccatgctcaggctctgagcctgaa 393
Query: 63 gctcaacataggtttctgtcatctacgtacaatctatgtaggtcaggacacagcagggga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gctcaacataggtttctgtcatctacgtacaatctatgtaggtcaggacacagcagggga 333
Query: 123 accccccaaggaggtctgggaccctcctgccatggagcctgttcctctacagtcctcttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 accccccaaggaggtctgggaccctcctgccatggagcctgttcctctacagtcctcttc 273
Query: 183 tctctacattaggttggccaccttgatggagatagtaaaggaatcactatctctttacag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tctctacattaggttggccaccttgatggagatagtaaaggaatcactatctctttacag 213
Query: 243 ttttggggtttttggttttttttttttttgctttgttttgttttgtttgtaggtttgtat 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttttggggtttttg-ttttttttttttttgctttgttttgttttgtttgtaggtttgtat 154
Query: 303 ttgttttgtttaagatgggagtctttcccaggctggcctcaaacttcttatgaggacaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttgttttgtttaagatgggagtctttcccaggctggcctcaaacttcttatgaggacaaa 94
Query: 363 gatgatctcagatttctgattcagatgtgtcccaaatgttgatcccaaattctatgacca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gatgatctcagatttctgattcagatgtgtcccaaatgttgatcccaaattctatgacca 34
Query: 423 tgtgccaccatgcctggttataccatgctaagg 455
|||||||||||||||||||||||||||||||||
Sbjct: 33 tgtgccaccatgcctggttataccatgctaagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_n22.g1 MSMg01no489_n22.g1 CHROMAT_FILE:
MSMg01no489_n22.g1 PHD_FILE: MSMg01no489_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:16 2005
(646 letters)
>mm_chr7_105450924_105451963
Length = 1040
Score = 1007 bits (521), Expect = 0.0
Identities = 601/651 (92%), Gaps = 44/651 (6%)
Strand = Plus / Plus
Query: 1 tcttgggacatgcaaaatggctcaatgggtaaaggtacctgccatcaagtgagaggacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tcttgggacatgcaaaatggctcaatgggtaaaggtacctgccatcaagtgagaggacct 288
Query: 61 aagttaacccccaagtcccaggtggtagaaaacagaattgactcttgcaaagtgtccttt 120
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 289 aagttaatccccaagtcccaggtggtagaaaacagaattgactcttgcgaagtgtccttt 348
Query: 121 gatggccacatgcatatgcacacatacacaataaataaataaataaataaataaataaat 180
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 gatggccacatgcatatgcacacatacacaataaataaatacataaataa---------- 398
Query: 181 aaataaataaataagaaagaaatttaacaaaagaattatcttctttaaggtgtcaggaat 240
||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 --------------gaa-g---tttaacaaaagaattatcttctttaaggtgtcaggaat 440
Query: 241 gt----tttttctgccagtccacaaatactcaggactaaaagactcctaatgaatgatta 296
|| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcacat----ctgccagtccacaaatactcaggactaaaagactcctaatgaatgatta 496
Query: 297 ctcacttatttcaagaaaaatggaagaagcctgagaaaag-aaaaggaaaaggaaaaaaa 355
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 497 ctcacttatttcaagaaaaatggaagaagcctgagaaaaggaaaagg----ggaaaaaaa 552
Query: 356 aagtaagaaagcagatacccctagtgacatatttatgagagacatctagtcaaagctttt 415
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 a-gtaagaaagcagatacccctagtgacatatttatgagagacatctagtca--gctttt 609
Query: 416 catgctgagctacataggaaaagaaacaaacacctttctcctatctaagtgaatcttaca 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 610 catgctgagctacataggaaaagaaacaaacacctttctcctatctaagtgaatcttata 669
Query: 476 gcagtcatggagactgagggctgcctacttccttctgtgtggatcctataaataggattg 535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcagtcatggagactaagggctgcctacttccttctgtgtggatcctataaataggattg 729
Query: 536 aagagtggcaacaaatacattaggaaatacaatacttagctcaaaccatcccaactccag 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aagagtggcaacaaatccattaggaaatacaatacttagctcaaaccatcccaactccag 789
Query: 596 aacaaaagggagatgatgagtgccaatcattatttccatcagtaaaggtgt 646
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aacaaaagggagatgatgagtgccaatcattatttccatcagtaaaggtgt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1040
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1030
Effective search space: 655080
Effective search space used: 655080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
