BAC Information

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BAC

Clone NameMSMg01-490G19
Chromosome7 (Build37)
Map Location 27,599,858 - 27,600,252
singlet/doubletsinglet
Overlap geneCyp2g1
Upstream geneCyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19
Downstream geneLOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490G19.T7 (MSMg01no490_g19.b1)MSMg01-490G19.TJ (MSMg01no490_g19.g1)
ACCAG568663AG568664
length736749
length of high quality
(start - end)		643 (74 - 716)579 (83 - 661)
definitionCHROMAT_FILE: MSMg01no490_g19.b1 PHD_FILE: MSMg01no490_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:00 2005CHROMAT_FILE: MSMg01no490_g19.g1 PHD_FILE: MSMg01no490_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCTCTTCTGAGCCCCATTTTTAGTGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATATGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGT
TTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGACTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCC
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGAT
TCGCATTCTTCTACACGATAACAACCAGATGTGCCAGCACCAATTGTTGA
AAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATC
AAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTTTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTT
CTTTTATCCTTGAGAAGAGCTTTTGCTATCCTAGGT

TTTTTTTTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCATAGTCTGAGGACC
AGCTGAGACATCCAACCTCACAGGCTGAACAATTATTGAATTTTTGGACC
TTCCATTGGTAGACTAGATGACCCATAGCCTGTAAGTCATTCTAATAAAT
CCCAAACTCACACACACACACAGAGAGAGAGGGGGGGTGTCTGTTCTTTT
AGAGCAGTAGTTCTTAATCTGTGGGTCACAACCCAAACAGGTGTCACATC
GCAAATATTTAAGTCACAACTCATCACAGTAACAAAATTACGCTTAAGAA
GTAAGCAATGAGATTCCCAATCTATGGTGGGGGTCACCACAACATGGAGA
CCCCTATTAAAGGGTCAAAACATTAGGAAGGGTGAAAACCACTGCTCTAG
AGAATCCTGACAAATATATAGCGTGTGCTAAAATAAATCTGATTTTATTA
ATTTTAAAGGAGTTTATTTTAAAGGTGCAAGAGGCTTACATTTCTATAGT
TTCTATATTTTTTTTCTAGAGATCAAAATAAACTACATGAAACAGTACTT
TCCCTTGTCACCCCACCCCCATAGTTGTAGATGGGTTTTGACATGGCAAG
AATGAAGGTTTCAGAAGACAGAAAGACCAGTGTAAGGGGAAGAAGTACCT
GGTGCATCTTGATGAGAAAGCATCTATGAAGTCCCTAAGGGTTGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_g19.g1 MSMg01no490_g19.g1 CHROMAT_FILE:
MSMg01no490_g19.g1 PHD_FILE: MSMg01no490_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:01 2005
         (579 letters)



>mm_chr7_27599272_27600252
          Length = 981

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%), Gaps = 2/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 187 ctgtgggtcacaacccaaacaggtgtcacatcgcaaatatttaagtcacaactcatcaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ctgtgggtcacaacccaaacaggtgtcacatcgcaaatatttaagtcacaactcatcaca 922

                                                                       
Query: 247 gtaacaaaattacgcttaagaagtaagcaatgagattcccaatctatggtgggggtcacc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtaacaaaattacgcttaagaagtaagcaatgagattcccaatctatggtgggggtcacc 862

                                                                       
Query: 307 acaacatggagacccctattaaagggtcaaaacattaggaagggtgaaaaccactgctct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaacatggagacccctattaaagggtcaaaacattaggaagggtgaaaaccactgctct 802

                                                                       
Query: 367 agagaatcctgacaaatatatagcgtgtgctaaaataaatctgattttattaattttaaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agagaatcctgacaaatatatagcgtgtgctaaaataaatctgattttattaattttaaa 742

                                                                       
Query: 427 ggagtttattttaaaggtgcaagaggcttacatttctatagtttctata-ttttttttct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ggagtttattttaaaggtgcaagaggcttacatttctatagtttctatatttttttttct 682

                                                                       
Query: 486 agagatcaaaataaactacatgaaacagtactttcccttgtca-ccccacccccatagtt 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 agagatcaaaataaactacatgaaacagtactttcccttgtcacccccacccccatagtt 622

                                              
Query: 545 gtagatgggttttgacatggcaagaatgaaggttt 579
           |||||||||||||| ||||||||||||||||||||
Sbjct: 621 gtagatgggttttgtcatggcaagaatgaaggttt 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 981
Length adjustment: 10
Effective length of query: 569
Effective length of database: 971
Effective search space:   552499
Effective search space used:   552499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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