BAC Information

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BAC

Clone NameMSMg01-490H15
Chromosome7 (Build37)
Map Location 110,710,942 - 110,711,625
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615
Downstream geneOlfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490H15.T7 (MSMg01no490_h15.b1)MSMg01-490H15.TJ (MSMg01no490_h15.g1)
ACCAG568703AG568704
length764767
length of high quality
(start - end)		679 (75 - 753)685 (80 - 764)
definitionCHROMAT_FILE: MSMg01no490_h15.b1 PHD_FILE: MSMg01no490_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:04 2005CHROMAT_FILE: MSMg01no490_h15.g1 PHD_FILE: MSMg01no490_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGC
GGAATTCAAGGCTTACACCTAAACATGATAAAAGCAATCTACAGCAAACC
AGCAGCCAACATCAAAGTAAATGGAGAGAATCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATA
GTACTTGAAGTATTAGCCAGAACAATTCGACAACAAAAGGAGATCAAGGG
GATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATAGTATATATAAGTGACTCCTAAAAATTCTACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATGAACTCAAACA
AGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGG
CGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAAT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT
TCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAA
CCTAGGATAGCAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATATCTAACTTCACCTCG
ACTTAAAATTGGTATATACTGTGTTATGTTAAGAGGTCAAGCCCCTGGAA
TTCATACAGGACATACCCAGGCACAAATTCATTACCCAAAGGAGATTTAT
TATCACGGAAGGCAAGTGGGGGTGGGGGTGGAATTGCAAAGGCAGGCATA
GCAGCAAGCAGAAGCAAAAGAACAAAGATGCAAAGAGATGCAGAAGATGG
CATTTTCCACAGAAGTGAGTTTTAAAGGGAAAGGGGAGTCTGTGCTAAGG
TGGCTTGGCATGTCATGGTTGGACATATTAACCAAATAATGAAATTGATA
ATTGACCTTGGTGTTTTGTGTCAGTGAACTACTAAGCGAATAGACCTCAG
GGGGTAGTCTTTAGGAAATTAGCAGTTTTAAGGAAGGCATGGGAAGAGGG
AGGAGTAAAAGGGCAAAAACCCCATATGCAATGTTTGTCATGCTCAGGCC
TGTGTTTGCCTTGCTTGGAACTGTTGGAGCCCCTTCACTACATAAACGTT
TTTAAAATAATTATGATTGTGTTAAATCTTTCTTCTCACTTTAGCAACAC
TATATATGTTTTTGGCTCTGGCTTATGACTGACAGTACATTTTTTTTTCT
CTTTCCTTAATAAAGTACTTGAACATACTTTAAAATTTGAGCTCATGATA
GTTAGACTTCTACAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_h15.g1 MSMg01no490_h15.g1 CHROMAT_FILE:
MSMg01no490_h15.g1 PHD_FILE: MSMg01no490_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:04 2005
         (685 letters)



>mm_chr7_110710742_110711825
          Length = 1084

 Score = 1180 bits (610), Expect = 0.0
 Identities = 667/686 (97%), Gaps = 3/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatatctaacttcacctcgacttaaaattggtatatactgtgttatgttaagaggtca 60
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 catatttctaacttcacctggacttaaaattggtatatactgtgttatgttaagaggtct 260

                                                                       
Query: 61  agcccctggaattcatacaggacatacccaggcacaaattcattacccaaaggagattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 agcccctggaattcatacaggacatacccaggcacaaattcattacccaaaggagtttta 320

                                                                       
Query: 121 ttatcacggaaggcaagtgggggtgggggtggaattgcaaaggcaggcatagcagcaagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccacggaaggcaagtgggggtgggggtggaattgcaaaggcaggcatagcagcaagc 380

                                                                       
Query: 181 agaagcaaaagaacaaagatgcaaagagatgcagaagatggcattttccacagaagtgag 240
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 381 agaagcaaaagaacaaagatgcaaatagatgcagaagatgacattttccacagaagtgag 440

                                                                       
Query: 241 ttttaaagggaaaggggagtctgtgctaaggtggcttggcatgtcatggttggacatatt 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ttttaaagggaaaggggagtctgtgctaagatggcttggcatgtcatggttggacatatt 500

                                                                       
Query: 301 aaccaaataatgaaattgataa-ttgaccttggtgttttgtgtcagtgaactactaagcg 359
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccaaataatgaaattgataaatt-accttggtgttttgtgtcagtgaactactaagcg 559

                                                                       
Query: 360 aatagacctcagggggtagtctttaggaaattagcagttttaaggaaggcatgggaagag 419
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatagatctcagggggtagtctttaggaaattagcagttttaaggaaggcatgggaagag 619

                                                                       
Query: 420 ggaggagtaaaagggcaaaaaccccatatgcaatgtttgtcatgctcaggcctgtgtttg 479
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 ggaggagtaaaagggcaaaaaccccatatgcaatgtttgacatgctcaggcctgtgtttg 679

                                                                       
Query: 480 ccttgcttggaactgttggagccccttcactacataaacgtttttaaaataattatgatt 539
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 680 ccttgcttggaactgttggagcctcttcactacataaaagtttttaaaataattatgatt 739

                                                                       
Query: 540 gtgttaaatctttcttctcactttagcaacactatatatgtttttggctctggcttatga 599
           ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 740 gtgttaaatctttattctcactttagcaacactatatatgtttttggctttgacttatga 799

                                                                       
Query: 600 ctgacagtacatttttttttctctttccttaataaagtacttgaacatactttaaaattt 659
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgacagtacatttttttt-ctctttccttaataaagtacttgaacatactttaaaattt 858

                                     
Query: 660 gagctcatgatagttagacttctaca 685
           ||| ||||||||||||||||||||||
Sbjct: 859 gaggtcatgatagttagacttctaca 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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