BAC Information

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BAC

Clone NameMSMg01-492A11
Chromosome7 (Build37)
Map Location 73,995,299 - 73,995,538
singlet/doubletsinglet
Overlap geneAdamts17
Upstream genePcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2, Lass3
Downstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492A11.T7 (MSMg01no492_a11.b1)MSMg01-492A11.TJ (MSMg01no492_a11.g1)
ACCAG569883AG569884
length837716
length of high quality
(start - end)
---236 (73 - 308)
definitionCHROMAT_FILE: MSMg01no492_a11.b1 PHD_FILE: MSMg01no492_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:08 2005CHROMAT_FILE: MSMg01no492_a11.g1 PHD_FILE: MSMg01no492_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAAATTGGGCCGTACAAGACTCACAATTTCGCACCCCCGCGGAATTCT
CCAGATACACCAACAGACTATAGCTCTGTGTGTGTGTGTGTGTGTGCGCA
TGTGTGTGTGCGCCTGAGTGTGTATGTGCACCCCCACAATTACCCCACCC
CAAAACAAAACACCCCAAAAACAAATAAAAATCCTCCCTCCCTCAATATC
TTAATTATACCCCCTTCTCCCCCAACCAAACAATACTATCTTTACTTCTT
CCACCTATCACACATTCCACACCCCCTTCTCCCCCATACCCCACAAATCC
TACCAACCATCCCCCAATTTTTTTTTTTTTCAAAACACCCAATATCCATT
ACACCCCCCACAAACAAAACTATTCTCACCCACCTCCCAAAACCTATCTC
CCCTCCCACTTTTCTCCTCCCTCTTCATCCTCCTAATATTACCCACCACC
ACCCCATTTATCCCACTTCCCCCCCCCACACCCTATATACCCCCACAACT
TACCCAACTATTACACCTTTTCCCCACACCACCCCCCAACAATTTCCCCA
ATTTTTATCTAATCCCCATCCAAAAACCCCACTCCAACACTACACCTAAA
TTTTTCCCCCCCCCCCACTCCTATCCGCCTATCCCCAACCCCCTACACTA
AATAAACAACTAACCATCACATCTTCCCCCCCACCCACACTTAACAACCC
TCATCCTCAAATTCCCCCTCAAACAAACACTAACTTATCCACCATCAACC
CACTCAAACTACACTAATATCAAAATCATCCCACCCTACCCCACACCATC
CAACATATTACCTTCCCCCACACCCACCTTGACAACT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCAGAAAATTCAGGGATCCTTCTGTCTCTTACTCTTGAGTG
CTGGGATTAGAGGTGTGCACTATTATGCCTGGCTTCAGAGCCTTAGTTTT
AAGCATCAGGAGCAAGTAGATACCAAGCACCAGATGGGCAGTATGGCTGG
GATACAATGTTCCCTACTCTGATGAGACCCCTCTGAACTTTCCTGCTTTT
TTTTTTTTTTTTTTTGGATGCTGGTCCTCAGCCTTGGAGTTATGGGAGTT
ATAATGAAATTTGGTAGTTTAACCCAGGCCAGCAGCATCTACATCACCTG
GAAACTTTTCAGTACATATGTCCTCTGGCCTTACGTCAGACTGGCAGTGT
CTAGAGGGCCACAGCTGGGACCGGTCACCAGGGATTCAGATACATGATCT
GGCGTGAAAACCACCACTTAAAAAGTGTCTTTTATGGAACAGGGTTTGGG
GAGAAGGAGATGACTTAGTTGGCAATGTCCGTGGCTCACTATCCTGACGA
CCTATAACTCATTTAAAGAGTAGGTATGGAGGAACACATCTGTAATCCCA
GCACTGGGAGCAGTGACAGGTGGATCCCCGTTTGTTGTTGTCCGGCTTCC
CTTGCTGAATTTGCGATTGTCTGGTTCAGCGAGATCATGTCTCACAATTT
CTGGGATCGATTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_a11.g1 MSMg01no492_a11.g1 CHROMAT_FILE:
MSMg01no492_a11.g1 PHD_FILE: MSMg01no492_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:08 2005
         (236 letters)



>mm_chr7_73995099_73995738
          Length = 640

 Score =  429 bits (222), Expect = e-125
 Identities = 234/240 (97%), Gaps = 4/240 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatccttctgtctcttactcttgagtgctgggattagaggtgtgcactattatgcctgg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatccttttgtctcttactcttgagtgctgggattagaggtgtgcactattatgcctgg 260

                                                                       
Query: 61  cttcagagccttagttttaagcatcaggagcaagtagataccaagcaccagatgggcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagagccttagttttaagcatcaggagcaagtagataccaagcaccagatgggcagt 320

                                                                       
Query: 121 atggctgggatacaatgttccctactctgatgagacccctctgaactttcctgctttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctgggatacaatgttccctactctgatgagacccctctgaactttcctgctttttt 380

                                                                       
Query: 181 ttttttttttttt----ggatgctggtcctcagccttggagttatgggagttataatgaa 236
           |||||||||||||    | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttttttttttttttgtatgctggtcctcagccttggagttatgggagttataatgaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 640
Length adjustment: 9
Effective length of query: 227
Effective length of database: 631
Effective search space:   143237
Effective search space used:   143237
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)