BAC Information

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BAC

Clone NameMSMg01-492B07
Chromosome7 (Build37)
Map Location 19,387,478 - 19,387,717
singlet/doubletsinglet
Overlap genenone
Upstream geneCeacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19
Downstream genePsg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492B07.T7 (MSMg01no492_b07.b1)MSMg01-492B07.TJ (MSMg01no492_b07.g1)
ACCAG569923AG569924
length737728
length of high quality
(start - end)		244 (70 - 313)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no492_b07.b1 PHD_FILE: MSMg01no492_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:12 2005CHROMAT_FILE: MSMg01no492_b07.g1 PHD_FILE: MSMg01no492_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCGCGGAA
TTCTTCAGAATTCCTTGAGAGACTCATGGCAAAGTTCTGGAGTTAGATCT
AACTGTCCACTTGTTTTCAATTCTTGGACAAGATGTCCCCTTAAGCAGCT
AATGACCAAGATGAACATCAGCTTCTCCCTGATTCACAGACACCTGGGAA
GGTTCCAGGGTTGGAACACTGCATACGTGCCTGGAGACAGAGAACTTGTG
TTTCCCATCTGTCACCTGTAGACTGTGTGATGCTCATGTGGCCACTGTGT
TCCCTGGGTCTCATTTTTTTCTGCAACAGCACAATAAAGGGAACAAATGT
TACAGTCTCAACAAATAGCCTTAAATATGAACAAGGGCCTGACACTGGAG
CAGGATAGCTCTCCAGATCAGCAGGGTCGGCTACCATTTGTTCCAAGGAG
AGGATTCTTGAGTTACTCCCTGAGAACTTGAATCATCAAGGGGACCTATG
TACTCTGTCCCTCTCCTGGAGAACCTGACCTTCTTGTGAGGTCTCATAAG
CCATCGGAAGAATTAGCTGATGGTCTGGCCACCTGGGCACCTGTGTAATC
CAGTCCGAGTCACATAAGGAAATGCCCAGCGGCCCCTGTATCATTAGTGG
GTCGGTCTATGCTTGTGTGTTTGGCTTGAGCACCAGCCTCTCGCTTGGGC
CTTTCCCTGGGTTCAGTCTCCGTCCGTCGTGGTCTGG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTCCTGCAAATTGTCTCGTGTGAGATTT
CTGAGCACATATCATAGCCCTGAGGACAGACTGTGGATGTTTCTAAGGGA
GGTTTAGTGTGCATCTTCTTATGTCTGATCTCTAGGGCAGCCTTGAGAAG
TAATATCTTGGAGGTCGCTGGCCCATGCTCAGCAGTGGAGGTCAGTTTAG
GTGGAGGGACACAGCTTCTTGGTGTAAGGCAGGCAGTGAATCACTGAGGA
CCCGGGGAGACTCGGTGGCTATGACTCCAGGTCCTAGGTCTGTACCATCA
AGCTCTGTAGCTCAGCTCCCATATGATGAAGACTGTTTCTCCCACACAGC
ACAGGAAACCCACCATGTCTGAGCACTCAGCTCCTCCTGTATCTGCCTGA
GTCATCATCTGTCTGGTTCTCCAAGGACATGGATAGGTGGTGGACGTTAC
AGAGACCAACAGTGGATGAAAGAGGCCTTTGCAAGCATCAGATTGTCCCA
CAGGGTCCAAGTTCTCTTTCTTGTCTGCAGAGCACTGCTACTTAATTTCA
CCACCAGAAGTGATTGTTCCAACCCCATATAGGGTGAATATGGTAGTCTT
AACGCATGAACCTGAGTTTCACAATATACCTACCTGTGAAGTTATATTGG
TCATCGCCTCTCTTTAGTTGAAAGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_b07.g1 MSMg01no492_b07.g1 CHROMAT_FILE:
MSMg01no492_b07.g1 PHD_FILE: MSMg01no492_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:12 2005
         (241 letters)



>mm_chr7_19387278_19387918
          Length = 641

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctgcaaattgtctcgtgtgagatttctgagcacatatcatagccctgaggacagac 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 440 agtcctgcaaattgtctcgtgtgagatttctgagcacatatcaaagccctgaggacgggc 381

                                                                       
Query: 61  tgtggatgtttctaagggaggtttagtgtgcatcttcttatgtctgatctctagggcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtggatgtttctaagggaggtttagtgtgcatcttcttatgtctgatctctagggcagc 321

                                                                       
Query: 121 cttgagaagtaatatcttggaggtcgctggcccatgctcagcagtggaggtcagtttagg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcgagaagtaatatcttggaggtcgctggcccatgctcagcagtggaggtcagtttagg 261

                                                                       
Query: 181 tggagggacacagcttcttggtgtaaggcaggcagtgaatcactgaggacccggggagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggagggacacagcttcttggtgtaaggcaggcagtgaatcactgaggacccggggagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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