BAC Information

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BAC

Clone NameMSMg01-492C06
Chromosome7 (Build37)
Map Location 136,368,294 - 136,368,416
singlet/doubletsinglet
Overlap geneLOC100043144
Upstream geneLOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
Downstream genePpapdc1a, Brwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C06.T7 (MSMg01no492_c06.b1)MSMg01-492C06.TJ (MSMg01no492_c06.g1)
ACCAG569967AG569968
length709787
length of high quality
(start - end)
123 (124 - 246)83 (76 - 158)
definitionCHROMAT_FILE: MSMg01no492_c06.b1 PHD_FILE: MSMg01no492_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:17 2005CHROMAT_FILE: MSMg01no492_c06.g1 PHD_FILE: MSMg01no492_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATGCGCGGA
ATTCCCATCATTACCTCACCTCCCACTTACCTTACTGTTATTTTAATCAG
GACAGTGCACACACTTTGAGCAGGGAGTAGAAGAAAAGATGACACCAGGC
TAGACAGAGAATGGTTTGAAAAGAAAAAAGGCCGTTCCTCCTCTGCCTAC
TTCCTGTACCCTTTAAAGAGAACCACTATACTGATAGTGCACACACTTTC
TTCCAGTAAAATATAAATGCATTGTAAGAATATATATGATTTCAAAATAG
TTGATCAGGGTATCTTTTTTTTTCTACCATCCCTCCAGGCATGCGAACAG
ATCTTCCCCTTCGTTTGTGTTCGAGATCTTTTAATATAAGATATCTATAT
TTTGCTCCACTTCTTATTATGCCAAAATAGTATCACTACTTTCCATAATT
TGGTACTCAGGTTTAGTTCATCCGCATAGCACTTATTTATTATATTTGAC
ACTCTTGGCTTTACCCCCAGTGTTGTAAGAACTAAATACTGCATGTATCT
ATTCCTCTATACTATCTCTGATTTATATTATCCAGCGGCTCTCACAACAT
GCCTTGATCTTTATTCATGCCCACCCGTGTTTTGTTTTTTTTTGTCCTAC
CCGGTTGGCTGCTTATTGCCTGCCGAGGTCTTAGGAGGGCTTTTACATCT
CTTTGTACG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCGAGAATCCACCAACCATGGAGAGAACATACTCATA
AATAATTATACCTATGTTAAACATGAATAGGCATTTTTCCTTGTCATTTT
CCCCTGAACAACTTAGTACAACATATTCCCATAGAATTCACTTGTATGGG
GAATTATGAGTGGCTAGAGTTAGCAAGTTTCTTGGAAGATGAATTATATA
TATGATATATATATATATATACACATATATATATATATATATATCACCCG
CATGTTACTTGAATCCCGTTTTTATATTGGCTAGCTTTGGCTGTCTCGTT
TACTATTCACTTTCTTTGTGCTTAGGATTTCTTGTTTACCCGCAATACAT
TTGCCATTTTAATTGCGTCCACATTATCGTCTCATTGTTGTTGGTAACCT
TTTCCAACTTCATCTATCTTTCAATTGCACATTGATTCTATCTCGGTTTC
CTCTGCTCTGCTCCTTACTGCTCCATCCCTGTGGGGTTTTCTTGCCCATC
ATATCCTTTTATTTCTCTCCCCTTCCCCTTTTCCTCCATCCTTTCGGCCC
TCTCCGCCCAATTTGCCTTACTTGTTCCTGTCTTCCTTTTGATCTTTGCC
GCATTTCTTCTTCCTTTTTGCATTATATCCCGCTTGTTTTTTTGCCTTTT
ACCTCCCCCGGTTCTTCTTCCCATACGTTTCCTTTTCCCCTTCATTTTTC
CACATTTTAGCATATTTGCTTATTATACACTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c06.b1 MSMg01no492_c06.b1 CHROMAT_FILE:
MSMg01no492_c06.b1 PHD_FILE: MSMg01no492_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:17 2005
         (123 letters)



>mm_chr7_136368094_136368616
          Length = 523

 Score =  230 bits (119), Expect = 2e-65
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagtagaagaaaagatgacaccaggctagacagagaatggtttgaaaagaaaaaaggcc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 ggagtagaagaaaagatgacaccaggctagacagagaaaggtttgaaaagaaaaaaggcc 264

                                                                       
Query: 61  gttcctcctctgcctacttcctgtaccctttaaagagaaccactatactgatagtgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttcctcctctgcctacttcctgtaccctttaaagagaaccactatactgatagtgcaca 204

              
Query: 121 cac 123
           |||
Sbjct: 203 cac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)