BAC Information

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BAC

Clone NameMSMg01-492N11
Chromosome7 (Build37)
Map Location 73,287,850 - 73,288,204
singlet/doubletsinglet
Overlap geneChsy1
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47
Downstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492N11.T7 (MSMg01no492_n11.b1)MSMg01-492N11.TJ (MSMg01no492_n11.g1)
ACCAG570501AG570502
length718780
length of high quality
(start - end)
516 (91 - 606)---
definitionCHROMAT_FILE: MSMg01no492_n11.b1 PHD_FILE: MSMg01no492_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005CHROMAT_FILE: MSMg01no492_n11.g1 PHD_FILE: MSMg01no492_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATATTTTCCAAATAATTCTTTCACCTGGCTGTCTTGGTCACAGTATC
TCCCTTAATCTTAAAGAACAAACCCTAATTTTGAATTTGATATTCAAAGT
GAATTTTGAATTATAGATTTATAGCATTATTTCATGCTTCTGACTTAATG
TCATTTGATTTTTAGTGTCTTAATTACATTTATGTAGTGTATGTGCAGCA
TGTGTGTGTAAATCAGACAACTTTTGGGAATCGGTTCTGTACGTCCACCA
TTCGGGTCTCATGACTGAACTCGGACCATCAGGTTTGGCAGCAAGTGCTT
CTGCCCTCTGAGCCTGGGGTCTGTTTCTTGATAGAGGGTCTCATGCAGCC
CAGGCTGCTCTCAAACTCCCTATGTAGGCAAGGATGAGTTTGAATTCCCT
CCACTCCTGCCTCCAGGTCCAGAATGCTGGATTTCAGGAATTCACCATTG
TATCTGGTTATGTGTTGCTATGGAGACTTCTTCCATGCTAGCCGAGCTCT
CTAAGTGAACTACACCCCCAGCCTCTTTTTGATTTTGAAATCTTTTCCTT
TTCCCTTGCACGTGACCTTGAACGTGGTCACACTATATATGATTACCACT
GCATGCATAGCCTGATGTGCTCTCCATGAGGCTGCGTGACGGTCACTGTG
TGCGTGGATGAACCCCCC
TAACTGGGAATCCTGGGGNCGCCNGTTTTCCAACTCGCNNGAACNANANN
AATTTCTNCCACCCGCGCAGCCNCGNANCGCAACANCNCANCCAGGGCGN
AAGCATANCCCACCAAACCANACANCNGCNNNGCCCACANGGANACAGGA
GTAACANCCACAGGAACCNNCCCCNNCACCNGCNANAGGNNGNCACCANA
NCCACAAACCANNCCCANNGGCCCAAAGCNNGNGTTTTTTNGANCACANN
GAGGCCGGCCCCTTCCTCCTAACAGGGCAANANACNANNCCCNCACGGGT
TTTTTTTTCAAAACAAAACCAACACCCCACNGGGCNNAACCCCCCTCCAA
ACCCCCNCAAGGNNNAAACACCGGAAAGNNAAAACACCCCCAAAACGGGC
CCCCCCAACGCCCCCCCCCCCAAAGANCCCCCGGGGAAAACACCCCGGGA
AAAACACCAAACAAACCCCACCCAAAAACACCGCNNNNCGGNNCCNACCC
CCCAAAAAAANNNCCCCCCACAAAAGGAGAGGGCAGGGGCGTCGCTCACN
NCTNNNNNNNNNCGGGCACCNAATTTNCNCNNCNNCCNNCACCNNCCCTC
CTTTTTTTTTTTGGTGGGAGGGGGGTGGGGAGTTGGNAGANACTCTNNNN
NCCNTNNTCCCACATACTCCCGCTCCACTGGGGGGGGGGGCTGCTCTGAN
AAGGANACTTAACTTCTGCNACCAAANCTCCACTACGATAGGGAGCGGGG
GGGGTGCTCTTATATCTAGATATCTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_n11.b1 MSMg01no492_n11.b1 CHROMAT_FILE:
MSMg01no492_n11.b1 PHD_FILE: MSMg01no492_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:11 2005
         (516 letters)



>mm_chr7_73287850_73288765
          Length = 916

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagtatctcccttaatcttaaagaacaaaccctaattttgaatttgatattcaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcacagtatctcccttaatcttaaagaacaaaccctaattttgaatttgatattcaaagt 296

                                                                       
Query: 61  gaattttgaattatagatttatagcattatttcatgcttctgacttaatgtcatttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaattttgaattatagatttatagcattatttcatgcttctgacttaatgtcatttgatt 236

                                                                       
Query: 121 tttagtgtcttaattacatttatgtagtgtatgtgcagcatgtgtgtgtaaatcagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tttagtgtcttaattacatttatgtagtgtatgtgcagcatgtgtgtgtaaatcagacaa 176

                                                                       
Query: 181 cttttgggaatcggttctgtacgtccaccattcgggtctcatgactgaactcggaccatc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 175 cttttgggaatcggttctgtacgtccaccattcgggtctcaagactgaactcggaccatc 116

                                                                       
Query: 241 aggtttggcagcaagtgcttctgccctctgagcctggggtctgtttcttgatagagggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aggtttggcagcaagtgcttctgccctctgagcctggggtctgtttcttgatagagggtc 56

                                                                  
Query: 301 tcatgcagcccaggctgctctcaaactccctatgtaggcaaggatgagtttgaat 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tcatgcagcccaggctgctctcaaactccctatgtaggcaaggatgagtttgaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)