Query= MSMg01no493_c16.b1 MSMg01no493_c16.b1 CHROMAT_FILE:
MSMg01no493_c16.b1 PHD_FILE: MSMg01no493_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:36 2005
(656 letters)
>mm_chr7_89190555_89191610
Length = 1056
Score = 944 bits (488), Expect = 0.0
Identities = 530/552 (96%), Gaps = 16/552 (2%)
Strand = Plus / Minus
Query: 1 gacattgagttgctcggagccctgcctccccttcccgagtgctggaattacagcgtttgt 60
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 551 gacattgagttgctcggagccctacctccccttcccaagtgctggaattacagcgtttgt 492
Query: 61 cccatgcccagtacacatagtgctggagaccaaacccagggcaactgtgttgcattctca 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 491 cccatgcccagtacacatagtgctggagaccaaacccagggcaactgtgctgcattcgca 432
Query: 121 gacgtctctgttagaatgttgacttgcttgtttctcttggacctcatttctcgacacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gacgtctctgttagaatgttgacttgcttgtttctcttggacctcatttctcgacacttg 372
Query: 181 agttctgctcttgcttgttttctaaatagagtgttcaaagcttgatacacagctacacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agttctgctcttgcttgttttctaaatagagtgttcaaagcttgatacacagctacacta 312
Query: 241 tcacctct--ggtgtgtgtgtgtgtgtgtg------------tgtgtgtgtgtgcctgca 286
|||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 311 tcacctctggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgcctgca 252
Query: 287 cattcatgtagaggccagaggaggtggcatcctccatcactctcgctgaacctgagcttc 346
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 251 cattcatgtagaggccagaggaggtggcatcctccatcactcttgctgaacctgagcttc 192
Query: 347 actgattcagccaagatggctga-tcggaaagttttgaagtattatcctgtcttgacctg 405
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 191 actgattcagccaagatggctgact-ggaaagttttgaagtattatcctgtcttgacctg 133
Query: 406 tcccagtgttgggctacaggtctacaccgctgcaattggcttttctgtgggtgataggga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tcccagtgttgggctacaggtctacaccgctgcaattggcttttctgtgggtgataggga 73
Query: 466 tcaaactcaggtctccaagcttgtttttcccactgagccatcttcccaaccccctgtacc 525
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tcaaactcagatctccaagcttgtttttcccactgagccatcttcccaaccccctgtacc 13
Query: 526 tcacactcttca 537
||||||||||||
Sbjct: 12 tcacactcttca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_c16.g1 MSMg01no493_c16.g1 CHROMAT_FILE:
MSMg01no493_c16.g1 PHD_FILE: MSMg01no493_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:36 2005
(627 letters)
>mm_chr7_89001826_89002852
Length = 1027
Score = 1181 bits (611), Expect = 0.0
Identities = 622/627 (99%), Gaps = 3/627 (0%)
Strand = Plus / Plus
Query: 1 actgtcttgattttaagccccacctctaggctggtgacacccaaacttgtatctacagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtcttgattttaagccccacctctaggctggtgacacccaaacttgtatctacagcc 260
Query: 61 tttgcctcttttgctggaacagatcaagactcccaattgcctttgggatagtgggaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcctcttttgctggaacagatcaagactcccaattgcctttgggatagtgggaacac 320
Query: 121 tgtgggtactgaaaatccaacacacccagaacacgttcttttctagtctcctcccacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgggtactgaaaatccaacacacccagaacacgttcttttctagtctcctcccacttt 380
Query: 181 gtccgattctttctggcatctttcatgtctgtctcctctgccctctcattgccattggct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtccgattctttctggcatctttcatgtctgtctcctctgccctctcattgccattgggt 440
Query: 241 tggttctggtcttatcatctcttgccaggataaattgtagaggcttcccaactgatcttc 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttctggtcttatcatctcttggcaggataaattgtagaggcttcccaactgatctt- 499
Query: 301 ttgctgcctctttttctggaaagcagttgtgcataccacaggcttttaagatgcttccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 --gctgcctctttttctggaaagcagttgtgcataccacaggcttttaagatgcttccct 557
Query: 361 caccaggtcggaccttagaagtagcttcctgcacttgaggttttctgagaggagcctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caccaggtcggaccttagaagtagcttcctgcacttgaggttttctgagaggagcctgat 617
Query: 421 cacctctctgtccctcaacacctcagtttccatccggagcgggtgacgcggagctcagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cacctctctgtccctcaacacctcagtttccatccggagcgggtgacgcggagctcagga 677
Query: 481 tgtggcatactctgtggcatttcccggtacctttttgttagttgagacagaatctcatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtggcatactctgtggcatttcccggtacctttttgttagttgagacagaatctcatat 737
Query: 541 atcccaggtcggcctcagacttgctgggtagctaaggatgaccttgaaccagggactccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcccaggtcggcctcagacttgctgggtagctaaggatgaccttgaaccagggactccc 797
Query: 601 tctgcctccatctcttagtgctgggat 627
|||||||||||||||||||||||||||
Sbjct: 798 tctgcctccatctcttagtgctgggat 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
