BAC Information

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BAC

Clone NameMSMg01-493K02
Chromosome7 (Build37)
Map Location 81,018,913 - 81,190,611
singlet/doubletdoublet
Overlap geneSt8sia2
Upstream geneEG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
Downstream geneLOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493K02.T7 (MSMg01no493_k02.b1)MSMg01-493K02.TJ (MSMg01no493_k02.g1)
ACCAG571102AG571103
length740850
length of high quality
(start - end)		655 (44 - 698)164 (75 - 238)
definitionCHROMAT_FILE: MSMg01no493_k02.b1 PHD_FILE: MSMg01no493_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:15 2005CHROMAT_FILE: MSMg01no493_k02.g1 PHD_FILE: MSMg01no493_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,018,913 - 81,019,563)(81,190,450 - 81,190,611)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCACATTTTCCTTTCGGGACCATGTTCTAACACATAACTCTCTCT
CTGTGTATGTGTGGGTGTGTGTGTGCGTGCAAACTCTGGACCTTCAAACG
GGGTCCATGAACTAGCCAGCATTACAGAATGCAGAAGTTCAGACTTGCTG
AATCAGAAATGATAAGGTCTGGGGTTCGGCCTACCACCATGTGCTTTTTA
TTTTAACTCTTAAATGATTACTCATTTTGAGCATGTGTTCACCGGTGTCT
TCTGTTGCATTGTTTCAGATGGTCTCTCACTACTCAGGAGCTCACTGATG
TGACTAGACTGGCTGGCCAGTGAGCTTCATGGATTCACCTGTATCTGCCA
CCCATCACTAGGGATACAGACACACATAGCCATGCCTGGATTTACTAGAG
TGCTGGGATCTAAACTCAGGTCCTCATCCTTGAGCAGAAAGTACCTTATT
GGTTGAGCCATCTCCCTGCTGACTTAAAAAATATTGCTGTAAAAATACCT
GATATACTTATTATTTTAACCATTTGTAAGCAGGCCATTCTATAGCTTTA
AACCTACTTCTATCTATACCCAAATTGTCTTCGCCATCCCAGCAATAGTC
CTACCCATTGACCAATTGCCCCCATCTCCTCTCTTCCCATCTTCTGGTAG
CCTCTAGCCTACTTCCTGTCTATAATTTGCCCCTTCTGTG

GCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTAGCCTGTCCTGCGTAGACATCA
ACACTGCGGGAGCAGCAAAGACTTGTGGGCCTGAAGTAGTCAAGCTCATT
AACACAACTTAAAGGAAGATGTTCAAAGGCACTGGGCAGAGGTCTGACTT
TCAGAGGAATTCTCTGTTAAATCTGGTGTGAAATGGNGATNNTTGGCCCN
CNAAACNAGCNCNCCGCAGGAGGAAAANCAATTGGAAAAAGGGCCCCGGC
CCTGGGGGGGGGNNCCCTTTTCTCCTCCTTTTTATTTTATTTATTATTTT
CATTTTAATACTCTCTTTATTCCTTTTGTTTGTGTGTGGTCTCTCTTTTT
TTTTTCTCCCACCCTTATTTATATTTATTGCTTTTGATGCCTTTATGTGT
GTATCCATCTCTTATACTATCAATTGATTTCGTACTTACTTTTTATCTAT
CCCATTATATTTTAGCAGGCGATAGATTTGCCATCTCCTTTTTGCCCCTC
GCTGCTTTTTTTTATGCCTCGTCTTCTCTCACTTACTTAGATTAATTCAT
ATATCCATTAGACTATGAACCTTTATCTTAAAAGTATGAGGATAGTGCGT
TCCTATGTATGTGTTTCAGTATTTGGTCTAACCAAGACTTTTATAAATTC
TTTCTCACTTTTATTTAAGATCATGGCGCTCTCTTATTTGTTTGTTTATT
TCTCTTTCCTTTTGTTTGTTTACCAATTTTATCCTATCCCTTTCTGCTTT
ATTATTCTTCCTCACAATCAAGTTAATATTGTGTGTACAACACTAATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_k02.b1 MSMg01no493_k02.b1 CHROMAT_FILE:
MSMg01no493_k02.b1 PHD_FILE: MSMg01no493_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
         (655 letters)



>mm_chr7_81018709_81019763
          Length = 1055

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcacattttcctttcgggaccatgttctaacacataactctctctctgtgta 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcacagcttcctttcgggaccatgttctaacacataactctctctctgtgta 264

                                                                       
Query: 65  tgtgtgggtgtgtgtgtgcgtgcaaactctggaccttcaaacggggtccatgaactagcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgggtgtgtgtgtgcgtgcaaactctggaccttcaaacggggtccatgaactagcc 324

                                                                       
Query: 125 agcattacagaatgcagaagttcagacttgctgaatcagaaatgataaggtctggggttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcattacagaatgcagaagttcagacttgctgaatcagaaatgataaggtctggggttc 384

                                                                       
Query: 185 ggcctaccaccatgtgctttttattttaactcttaaatgattactcattttgagcatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 ggcctaccaccatgtgctttttattttaactcttaaatgattactcattttgagcatatg 444

                                                                       
Query: 245 ttcaccggtgtcttctgttgcattgtttcagatggtctctcactactcaggagctcactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcaccggtgtcttctgttgcattgtttcagatggtctctcactactcaggagctcactg 504

                                                                       
Query: 305 atgtgactagactggctggccagtgagcttcatggattcacctgtatctgccacccatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtgactagactggctggccagtgagcttcatggattcacctgtatctgccacccatca 564

                                                                       
Query: 365 ctagggatacagacacacatagccatgcctggatttactagagtgctgggatctaaactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctagggatacagacacacatagccatgcctggatttactagagtgctgggatctaaactc 624

                                                                       
Query: 425 aggtcctcatccttgagcagaaagtaccttattggttgagccatctccctgctgacttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtcctcatccttgagcagaaagtaccttattggttgagccatctccctgctgacttaa 684

                                                                       
Query: 485 aaaatattgctgtaaaaatacctgatatacttattattttaaccatttgtaagcaggcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatattgctgtaaaaatacctgatatacttattattttaaccatttgtaagcaggcca 744

                                                                       
Query: 545 ttctatagctttaaacctacttctatctatacccaaattgtcttcgccatcccagcaata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctatagctttaaacctacttctatctatacccaaattgtcttcgccatcccagcaata 804

                                                              
Query: 605 gtcctacccattgaccaattgcccccatctcctctcttcccatcttctggt 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtcctacccattgaccaattgcccccatctcctctcttcccatcttctggt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_k02.g1 MSMg01no493_k02.g1 CHROMAT_FILE:
MSMg01no493_k02.g1 PHD_FILE: MSMg01no493_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
         (164 letters)



>mm_chr7_81190250_81190813
          Length = 564

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtagcctgtcctgcgtagacatcaacactgcgggagcagcaaagacttgtgggcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctgtagcctgtcctgcgtagacatcaacactgcgggagcagcaaagacttgtgggcctga 303

                                                                       
Query: 61  agtagtcaagctcattaacacaacttaaaggaagatgttcaaaggcactgggcagaggtc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 302 agtagtcaagctcattaacacagcttaaaggaagatgttcaaaggcactgggcagaggtc 243

                                                     
Query: 121 tgactttcagaggaattctctgttaaatctggtgtgaaatgg 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgactttcagaggaattctctgttaaatctggtgtgaaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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