BAC Information

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BAC

Clone NameMSMg01-493L24
Chromosome7 (Build37)
Map Location 111,533,591 - 111,534,215
singlet/doubletsinglet
Overlap geneEG434219
Upstream geneDub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik
Downstream geneLOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493L24.T7 (MSMg01no493_l24.b1)MSMg01-493L24.TJ (MSMg01no493_l24.g1)
ACCAG571193AG571194
length763752
length of high quality
(start - end)		583 (47 - 629)625 (73 - 697)
definitionCHROMAT_FILE: MSMg01no493_l24.b1 PHD_FILE: MSMg01no493_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:24 2005CHROMAT_FILE: MSMg01no493_l24.g1 PHD_FILE: MSMg01no493_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGACTCTTTCTGCAGACAACTGAATTACTGGCTAGTGCTTTAT
TGTTTTATGGTAGTGCTTAATTAGTTACTGAATAGGTTAAACTCCTTGCT
GCTATATGGAATCTAAGAACACTGGGAGAAGGCTTTAGCTATGTTAGAAT
ACAATCTTAAAAGGCATTTACTATAATTTATTTACTATAAGGTAAATAGA
GTGCACATGAATCTATACACTAGACTAACGTGGTGGAAATTTGATTATTA
TGGGTTAGGGAAAAAACGCCATAACTCCGGGAGGGAAATTTCCATGGAAC
TCATCCTCGTGAAACAGCTTCCAGACGTTTCCCCTGTCAAACTGACCCAA
ACTGGAGAGTTGACTTTCGCCAGACATCCAGGAGGAGAGTCCTAGAAATT
CATTTCTCATGAGTAGCTTTTTGGCATTTCTGCCTCACAAGCTGACTCTA
CCAGAGTGACCTGGCAATAAAGGACTTTAGGAATGTGATAAATAACTCAC
TTTAAGAAATACAGGAGAACATAGGTAAATAGGTAGAAGCCCTTTTAAGG
GAAACACAAAAATCCCTTTAAAAATTACAGAGACACACAACCAAACAGGT
GAAAAACTGGAAGATAACCAGTCTCTTANNAAGAGNAATAGAAATCATAA
AGAAATCACAAAGGGAGACCACCCTAGAGATAGAAAACCTAGGAAAGAGA
TCAAGAGTCATAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGAGGTTTGGGTTCCACTGGATATTG
GTAGATATATGCGAATTTACATTCTTAAAGAACTACAATCCCTTTCTTCC
TGCAGTTAAGAATTACTAGTAGCTCCTGCAGTGCAAGTGAGTTTCCTAAA
CAAGTTTGCTTTCTGTACTTGAATTTGGTGTTGTTTGGGCTTACACAGGT
CTTGGGTTTGGTGTCAAAACCAATCTTAGTTCATATGGGCTGCTGCTAAG
CTGTGTCAAAAAGATAATTTTTTTTGTTGTCATCCACATCTGGCTCTTAC
ACTCTTTATGTCCTTTCTTCTCCAGTGTTCCCTGGGTCTTTGAATTAGTG
GTGCAGCATATATGTTCTATTTAGGGCTGGATATTCTGCAATCTCTTGCA
ATATTTACCTTGAGAGTTGTGAATCTCACTCTGTAACCATGCTGGCCTGT
AACTCACTACATACAGCATGCTGGCTTTGAACCCACCTAAGATTAATTTG
TTCTTGCATCCCAGCTGCTGGAGTAAAAGAAAGCCTATATTTTCTTTTCA
TTATTGTGGCCTGTTCATCTATATATTTTTATTTCTGTATATTAGAAGCT
CTGAAGTTCTGAGATTACAGGCTACTACATATGGATTTATCTTACATAAT
GTAAACNAACAAAAGCATATTCCACAGTAAAAGGTATTTTGTGAGAGAAC
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_l24.g1 MSMg01no493_l24.g1 CHROMAT_FILE:
MSMg01no493_l24.g1 PHD_FILE: MSMg01no493_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:24 2005
         (625 letters)



>mm_chr7_111533391_111534415
          Length = 1025

 Score = 1154 bits (597), Expect = 0.0
 Identities = 618/625 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaggtttgggttccactggatattggtagatatatgcgaatttacattcttaaagaa 60
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ttggaggtttgggttccgctggatattggtagatatatgcaaatttacattcttaaagaa 260

                                                                       
Query: 61  ctacaatccctttcttcctgcagttaagaattactagtagctcctgcagtgcaagtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacaatccctttcttcctgcagttaagaattactagtagctcctgcagtgcaagtgagt 320

                                                                       
Query: 121 ttcctaaacaagtttgctttctgtacttgaatttggtgttgtttgggcttacacaggtct 180
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttcctaaacaagtttgctttctgtccttgaatttggtattgtttgggcttacacaggtct 380

                                                                       
Query: 181 tgggtttggtgtcaaaaccaatcttagttcatatgggctgctgctaagctgtgtcaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtttggtgtcaaaaccaatcttagttcatatgggctgctgctaagctgtgtcaaaaa 440

                                                                       
Query: 241 gataattttttttgttgtcatccacatctggctcttacactctttatgtcctttcttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataattttttttgttgtcatccacatctggctcttacactctttatgtcctttcttctc 500

                                                                       
Query: 301 cagtgttccctgggtctttgaattagtggtgcagcatatatgttctatttagggctggat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cagtgttccctgggtctttgaattagtggtgcagcatatatgttctatttagcgctggat 560

                                                                       
Query: 361 attctgcaatctcttgcaatatttaccttgagagttgtgaatctcactctgtaaccatgc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 attctgcaatctcttgcaatatttaccttgagggttgtgaatctcactctgtaaccatgc 620

                                                                       
Query: 421 tggcctgtaactcactacatacagcatgctggctttgaacccacctaagattaatttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcctgtaactcactacatacagcatgctggctttgaacccacctaagattaatttgtt 680

                                                                       
Query: 481 cttgcatcccagctgctggagtaaaagaaagcctatattttcttttcattattgtggcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgcatcccagctgctggagtaaaagaaagcctatattttcttttcattattgtggcct 740

                                                                       
Query: 541 gttcatctatatatttttatttctgtatattagaagctctgaagttctgagattacaggc 600
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 gttcatctatatatttttatttctgtatattagaaactctgaagttctgagattacaggc 800

                                    
Query: 601 tactacatatggatttatcttacat 625
           |||||||||||||||||||||||||
Sbjct: 801 tactacatatggatttatcttacat 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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