BAC Information

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BAC

Clone NameMSMg01-494A06
Chromosome7 (Build37)
Map Location 147,394,972 - 147,395,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524
Downstream geneE430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494A06.T7 (MSMg01no494_a06.b1)MSMg01-494A06.TJ (MSMg01no494_a06.g1)
ACCAG571395AG571396
length721735
length of high quality
(start - end)
650 (59 - 708)667 (66 - 732)
definitionCHROMAT_FILE: MSMg01no494_a06.b1 PHD_FILE: MSMg01no494_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:45 2005CHROMAT_FILE: MSMg01no494_a06.g1 PHD_FILE: MSMg01no494_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AATATCCAGTGGCTGGTGTTGTGGGTATCTGGTGGTAGTCAGCCGACTGT
GCGCCCTAGCTACCCCGGTGCTGCTCGGACCGCAAGGGGCTTGTGCCCCT
ACTCAGACCTGGTTTTTGCTTCCCTGACTAATGCAGTCTCAAGTCCCGCG
CAATTGGATTGGAGCAGATGCTGTGTTCCACTCACCAGAAGTCTTAAGAT
CGCTTGGCGGGTGTTGTGGGTAGCTGGAGGTAGTCAGCCAACTCTGTGCC
CCAGCAACCCAGGTGCTGCTCAGACCGGAAGGAGTGCTGGCCCTTTAATG
CACTCCAACAGTTTACAGATGGTGTAGATTTTGTGGGCCAACTCAAAGCC
CTGTATCTAGGCATGGGTGGTAGCTGAGCTGGTCAACCTACTGGCTCTTT
CATATCGACATCACCAGGGCCAGCTCCACTGTGCTGTCCAGGGGGAGGTG
CAGGGCCCATTTACTCAAGGGCTGCAGCCAACGAGGGGCAGAGCCAGTTC
TCCCACTCTCATGACTTTGGAAGCAGCTCCCTTGACTGCTGAAGGTGGTG
AGGGGCAAAGGGTGGCTTTGAGGTTGGTGAGAGGTTGGGTGCTGCAGCCA
GTGAGGGGTGGGGTCAGTTCTGCACAGTTTCCCAGGGAGAGTTGGGTAAT
GGAGAGGGTATATNGGAAGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATCCTATCAAGACTAGTTAAGATAAAAGAGGAAC
CCCACAAATTATCAGTAGGGCTTGAGAGATTGAAGAGGGGTATCTTGTAT
ATGTCACTAATGGCTAAAAGTAATATAAGAAGTTTACAAATAGCTTCATC
ACAATAAATTTATCAATGAAGATTAACTTTACACATTCAGAAGCACCGAT
TCAATCATGGATAGATTATTTGAATATCCCTGTACTTATCAGAGAAATTA
AATTTATAATAAAAAATTTCCACTCTGGAGGCTCCTCAAAAAAAAGAAAA
AAAACCCTAAAAACAAAATAAAGCAAAACAACAACAACAACAAAACAGAA
ACAAAAAACATTCACATGACTCAACTACACAGCTCCTGTTCATGTGACCC
AGCTACCCCACTCCTGGGCATCTGTGTGACCCAGCTACCCCACTCCTGGG
CATCTGTGTGACCCAGCTACCCCACTCCTGGGCATCTGTGTGACCCAGCT
ACTCCACTCCTGGGCATCTGTGTGACCCAGCTACACCTCTCCTGGGCATC
TGCTTGACCCAGCTACCCCACTCCTGGGCATCTGTGTGACCCAGCTACAC
CACTCCTGGGCATCTGTGTGACCCAGCTACCCCACTCCTGGGCATCTGTG
TGACCCAGCTACACCACTCCTGGGCATCTGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_a06.g1 MSMg01no494_a06.g1 CHROMAT_FILE:
MSMg01no494_a06.g1 PHD_FILE: MSMg01no494_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:45 2005
         (667 letters)



>mm_chr7_147394783_147395849
          Length = 1067

 Score =  942 bits (487), Expect = 0.0
 Identities = 526/545 (96%), Gaps = 13/545 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcctatcaagactagttaagataaaagaggaaccccacaaattatcagtagggcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 catcctatcaagactagttaagataaaagaggaaccccacaaattatcagtagggcttga 249

                                                                       
Query: 61  gagattgaagaggggtatcttgtatatgtcactaatggctaaaagtaatataagaagttt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 250 gagattgaagaggggtatcttgtgtatgtcactaatggctaaaagtaatataagaagttt 309

                                                                       
Query: 121 acaaatagcttcatcacaataaatttatcaatgaagattaactttacacattcagaagca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaaatagcttcatcacaattaatttatcaatgaagattaactttacacattcagaagca 369

                                                                       
Query: 181 ccgattcaatcatggatagattatttgaatatccctgta-c-------ttatcagagaaa 232
           ||||||||||||||||||||||||||||||||||||||| |       ||||||||||||
Sbjct: 370 ccgattcaatcatggatagattatttgaatatccctgtatcagagaaattatcagagaaa 429

                                                                       
Query: 233 ttaaatttataataaaaaatttccactctggaggctcctcaaaaaaaagaaaaaaaaccc 292
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 430 ttaaatttataataaaaaatttccactctggaggctcctcaaaaaaa-gaaaaaaaaccc 488

                                                                       
Query: 293 taaaaacaaaataaagcaaaacaacaacaacaacaaaacagaaacaaaaaa----cattc 348
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 489 taaaaacaaaataaagcaaaacaacaacaacaacaaaacagaaacaaaaaaagaacattc 548

                                                                       
Query: 349 acatgactcaactacacagctcctgttcatgtgacccagctaccccactcctgggcatct 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acatgactcaactacacagctcctgttcatgtgacccagctaccccactcctgggcatct 608

                                                                       
Query: 409 gtgtgacccagctaccccactcctgggcatctgtgtgacccagctaccccactcctgggc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtgtgacccagctaccccactcctgggcatctgtgtgacccagctaccccactcctgggc 668

                                                                       
Query: 469 atctgtgtgacccagctactccactcctgggcatctgtgtgacccagctacacctctcct 528
           ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||
Sbjct: 669 atctgtgtgacccagctaccccacttctgggcatctgtgtaacccagctacaccactcct 728

                
Query: 529 gggca 533
           |||||
Sbjct: 729 gggca 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)