BAC Information

Click to search

BAC

Clone NameMSMg01-494C12
Chromosome7 (Build37)
Map Location 152,030,486 - 152,030,634
singlet/doubletsinglet
Overlap genenone
Upstream geneDhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3
Downstream geneFgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494C12.T7 (MSMg01no494_c12.b1)MSMg01-494C12.TJ (MSMg01no494_c12.g1)
ACCAG571503AG571504
length733852
length of high quality
(start - end)
148 (112 - 259)---
definitionCHROMAT_FILE: MSMg01no494_c12.b1 PHD_FILE: MSMg01no494_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:56 2005CHROMAT_FILE: MSMg01no494_c12.g1 PHD_FILE: MSMg01no494_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGTCCGCAAAGANNCACATCCAAAATAGGGGCGCGGAANNCTCAATTC
TAAAAAGGTAGCCNTGAACTCACAAAGATCCAGAAATTTCCTTGGATGAC
TTTGACTCTGGTAGTTGACCTGCTCCCCCCCCCCCTTCCTGCATTACGGG
GTCTTCTTTTTAGGGTCACCCAATACCTGGTACTATGGTGCTAGGGAAGC
TGGCAAAAATGTCACAGCTGCCTTGGGGTGTGGTTCAATGGCCTGTGTGG
TATGTTCTATACCTCAGATCTTATCTCTAGCACTGCAACACACACACACT
TTTTTTTACACACACATACCCCGCAAATAAAAAACACCAACTCAATAGAA
CCTTAATTAAACACCACATCACCAACCATATGGTTCTTTAAACAGCAGGA
ATGTATTGTTACAGCCTGAATGTCACAACTCTACGGTTAAGTTAGTGGGT
AAGGCTTATCAAGGCTTGCTTGCGGTGCCTCCTGATCTTTTAGGGCATCC
TCCAGCCTCTTATCTGTGGAAGCTTCACCCTGACCCAGCCCCCATGTCCT
CATGGCAACTTCCTGTTGGAATGCCCTGAACGTGCTTGTGTTCTTCTCCG
GGGCCTTCGCGCGCCGTGGGTTTGTCTTACTTTTATGTCCCCATTTCTTC
CTCATTTACTCTAAGTGGCTTATCTTTGGCGCCTTCCCTCGAGCTTGTCA
TGGGCTTCCCGATTGCCTTTCTCCTTTTTTTTT
GGTTGGCGCCGAGGCGAACGCGCNGGTACTAGACAAAATTGAGGGGGACA
GCGANAGGATTCTTCTCCAAAGGAAGTGCCNGAAGACGTGTATGATCAGA
CTCGGTAATGCGCTACTAGGAGCTCTTGGGGCTACCATGAACGTCCTTCT
GGCGTAGTCGGCTACCTCGTATGAAGTTTTTCAGCGCATGTGTTGTCGGC
CTCATTCTGGGTCTGCTGGTGATATCATGGCTTCCTATCTCTGGCGGCAC
TGCATGGCTGTCTCCACTGTTTCTCAGTTGTATAGAGTCCTTGCTGTGTT
ACCACATAATTCACCATATCCTGCCCTGGACACACTCTTCCTCTCTTCAA
TATCTTTTTGTACATGTGCGCAAGTGCTGTAGGTAGCTCGGTCCCTGCAG
GATTCCCATTCATATACTACATTCTGTGTAGGAATGCTTCTTCTGTTTTG
ATCACTGTATGGCATTGCAGCCACTTTTGAGTCTCCGTTTCATCTGATGC
TTCTCTCACTTTATATACATCACGATGTCTTATCTTCACAGTCTACATTG
GCCTCCTGGATTCTTTTAGCCCCTTACTACGCTCTAAACTATTAGTCTGT
CCTCCCTCTATCATTGTAACTCACCTTTTCCCCTGGTTTGCTTCTTGTTC
GCTTACCACCTTATTACTTTTTTTTTTGTCCCACTCCCCTTATTTTCCCA
TTAGCTTTTTGTCACTCTTCTTTTTGCCACGATCTTCCTCTTCCTTAGTA
TACCCACATTTGATTCTTATTGCACTTTTTGTTCCCTCTCTCCATAACCA
TATATTACACCCTCCTCGCATCTCTTATCTTATATACCTTATTTTCTATG
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_c12.b1 MSMg01no494_c12.b1 CHROMAT_FILE:
MSMg01no494_c12.b1 PHD_FILE: MSMg01no494_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:56 2005
         (148 letters)



>mm_chr7_152030285_152030834
          Length = 550

 Score =  269 bits (139), Expect = 6e-77
 Identities = 146/149 (97%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agttgacctgctccccccccc--ccttcctgcattacggggtcttctttttagggtcacc 59
           |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||
Sbjct: 350 agttgacctgctccccccccccaccttcctgcattacggggtcttctttttagggttacc 291

                                                                       
Query: 60  caatacctggtactatggtgctagggaagctggcaaaaatgtcacagctgccttggggtg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caatacctggtactatggtgctagggaagctggcaaaaatgtcacagctgccttggggtg 231

                                        
Query: 120 tggttcaatggcctgtgtggtatgttcta 148
           |||||||||||||||||||||||||||||
Sbjct: 230 tggttcaatggcctgtgtggtatgttcta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 550
Length adjustment: 8
Effective length of query: 140
Effective length of database: 542
Effective search space:    75880
Effective search space used:    75880
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)