BAC Information

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BAC

Clone NameMSMg01-494J21
Chromosome7 (Build37)
Map Location 138,180,543 - 138,181,082
singlet/doubletsinglet
Overlap geneDmbt1
Upstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1
Downstream gene4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494J21.T7 (MSMg01no494_j21.b1)MSMg01-494J21.TJ (MSMg01no494_j21.g1)
ACCAG571854AG571855
length713752
length of high quality
(start - end)
219 (47 - 265)540 (60 - 599)
definitionCHROMAT_FILE: MSMg01no494_j21.b1 PHD_FILE: MSMg01no494_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:30 2005CHROMAT_FILE: MSMg01no494_j21.g1 PHD_FILE: MSMg01no494_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCA
GCATAGTTTCCACTATTGGCTTGTTCAAACATCAGCAGAAAAATTACATG
TATGTGCAGGGTGTCAGAGTTCTGAGAGTTGTTGACTCAGTTCAGATAGC
CCTGTTATGTCCTCACATTCCTCTTTATCTTAGATGGTCAAGCTGTTCCC
AGGAATGTTTTAACTACGGGGCATAGCTGGGTTTGTTTTTCTTTGTTCTC
AGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTGAGTACT
TTTATATGAACTTACAGGTCTTGAAAATTTCATCTTTTCTTTCCCAAGCC
TTTTAATTGAACCAATTGGGGAGGGTTTCCGGGGACCCCCCTAAAAAATC
AAAAACGTTTTTTTTAAAAAGGGCTTAAAATTTTAAAAAAAAAAAAAAAC
CTTTGGGGGGCCTTGGTGGGAAAAAAGTGTTTTTTTCCGGGGGTAAAAAA
AAAAATTTTTTTTCCCCCCCCAAAATTACCCCCCCCCTCGGGGAAAAAAA
CCACCCCCCGGGGGGAAAGGGCCCACCCCGCCCCCTTTNCTGTGTTGTTT
ATAATAATAAAAAAAAAAAACAAAAAAAAAATNNAGTTGGTGGGGGGTGC
TGTTCGCCCCCCCCCCTCCCATATTTTGTTGGGGGCGGGGGGGCCGAATC
TTATACACCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTCATGCAGACCATGTAGACCTTGATTTGCATAAACCTACC
TGATTGTGTCCCAGTAGTGCAGGGATTAAAGGTGTGAGCCATCATTCCTG
GACTTTGAGAAAGCAGTTTGGGACAGGGAAGTGACTAAAATATATAGGTG
TTTTGTCAAAATAAAACTTAAGGAGCAGCCACTGGTCATGGGTGGGTTGT
CGGGACAGCCCTGGGCGTGACTTCAGAGAGTCTGGGCAGGTCTGTGATAA
GCAGCATTATATAAGAGCTAGACAGAGGCAAAGTTGAGTGGAGATGTCAC
AGAGAGGTCACAGAGCAGGGCAGGTTGGAGAGGAGAGAGGTACAGCCTAG
TGGGTGAGCCTTAGTGAGAGCTGAGAGTGAAGGTGGAAAGAAACAGACAT
CAAATGTGATGTCCAAGTTCCAGCACACTTGTGGCTGTGCGTGGTAGCAT
CAAAGATCCCAATGAAATACTGAGTTTAGAGTGGTTGACATGGATATCCT
GGATACTGATGGAGTGATATCCAGTGTGAGTCTGGAGTTCTACACTGGGA
CTGTCAGGGCTAAATAAGGACTAAAGAGGTGACCTTGAGAGACCCTTGTC
TAGGAAGTTTATAGAGGATATGGGAAAGAGGATACTANGAAGACGATGTA
GAAAGTAACCTTTTGGCTCCTAGGGTGGGGAATGACAAGTAAGACAGCCC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_j21.g1 MSMg01no494_j21.g1 CHROMAT_FILE:
MSMg01no494_j21.g1 PHD_FILE: MSMg01no494_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:30 2005
         (540 letters)



>mm_chr7_138180343_138181282
          Length = 940

 Score =  975 bits (504), Expect = 0.0
 Identities = 531/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatgcagaccatgtagaccttgatttgcataaacctacctgattgtgtcccagtagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgcagaccatgtagaccttgatttgcataaacctacctgattgtgtcccagtagtg 260

                                                                       
Query: 61  cagggattaaaggtgtgagccatcattcctggactttgagaaagcagtttgggacaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggattaaaggtgtgagccatcattcctggactttgagaaagcagtttgggacaggga 320

                                                                       
Query: 121 agtgactaaaatatataggtgttttgtcaaaataaaacttaaggagcagccactggtcat 180
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaactaaaatatataggtgttttttcaaaataaaacttaaggagcagccactggtcat 380

                                                                       
Query: 181 gggtgggttgtcgggacagccctgggcgtgacttcagagagtctgggcaggtctgtgata 240
           |||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 381 gggtgggtcgtcgggacagccctgggcatgacttcagagactatgggcaggtctgtgata 440

                                                                       
Query: 241 agcagcattatataagagctagacagaggcaaagttgagtggagatgtcacagagaggtc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagcattagataagagctagacagaggcaaagttgagtggagatgtcacagagaggtc 500

                                                                       
Query: 301 acagagcagggcaggttggagaggagagaggtacagcctagtgggtgagccttagtgaga 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 acagagcagggcaggttggagaggaaagaggtacagcctagtgggtgagccttagtgaga 560

                                                                       
Query: 361 gctgagagtgaaggtggaaagaaacagacatcaaatgtgatgtccaagttccagcacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgagagtgaaggtggaaagaaacagacatcaaatgtgatgtccaagttccagcacact 620

                                                                       
Query: 421 tgtggctgtgcgtggtagcatcaaagatcccaatgaaatactgagtttagagtggttgac 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggctgtgcatggtagcatcaaagatcccaatgaaatactgagtttagagtggttgac 680

                                                                       
Query: 481 atggatatcctggatactgatggagtgatatccagtgtgagtctggagttctacactggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggatatcctggatactgatggagtgatatccagtgtgagtctggagttctacactggg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)