BAC Information

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BAC

Clone NameMSMg01-494M03
Chromosome7 (Build37)
Map Location 68,024,142 - 68,024,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664788, Snrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
Downstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M03.T7 (MSMg01no494_m03.b1)MSMg01-494M03.TJ (MSMg01no494_m03.g1)
ACCAG571962AG571963
length723733
length of high quality
(start - end)
657 (65 - 721)658 (67 - 724)
definitionCHROMAT_FILE: MSMg01no494_m03.b1 PHD_FILE: MSMg01no494_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:40 2005CHROMAT_FILE: MSMg01no494_m03.g1 PHD_FILE: MSMg01no494_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
GTTTTCTCTCCAACACTAGGGCATTTCATCTAATCTACCTCCCTTTGCAT
TCTGAGCATCTCTCCAGTACAAGGTCTTGGCTACATTCTATAAGAAGTGC
CCCCCCACTCCTACCTCCTGAAGTTGCCCTGTTGCCATACAATCTGCTGG
CCCTCAGGGCTTCACTTCTGTTTTCCCATCCACAATATCTGATCATGTTC
CCCTTTTCCCCTAGCTGAAACCTCTCCCATGCAGGTCCTGACCTCCCTCT
GCCCCTATGATTGCTTTCTTCTCCCTCTGAAGTAGGCTTGAGGTATTCTT
ACTTTGGTCCTTCTGCTTGTTTATCTTCTTGAGTCTTTGAATTGTATAAT
GGGTATTATGAATTTGGCTAATATCCACTTATTAGTGAGTACCTAACATA
CATGTCCTTTTGGTCTCTTCCTTTTGTTGCCAGACAATGTCATTCTCTGC
TACATATGTGGTTGGAGCCATGGGTCCCTTCATGTGTTGGTTGTTGGTTC
AGGCTTTTCAGGTCTGGGAGGTCTATTCGGTTGCTATTTTTGTTCTTCCT
ATGGGCTTGCAAACTCCTTCAGCTCTGATGGAGGCTCTTTTAAGACTCCT
TTACTGGGGACCCCATGCTCAAATCAAATAGTTGGCTGTGAGTAACTGCC
CCTGTATTTGTTAGGTTCTGCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGTAGGAGAAACCAAGAATGGGGATATTATTTG
AAATTTAAATGAATGAAAGGAGGGGAAAATGATTTCACTGATGATTTTGA
GAGGACAAAGAGAAGCTCAGTAAGACCCTATATCAGACACACATGACACA
TTAAAAGAAGACTTGAATAAATTTAGCCTATGTGTACAAAAAACTACAAA
AATAAAAGTATTAGCCTTGCTGGGCAGTGATTGCACACACCTTTAATCCT
AGCACTTGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAGGCCAGTCTG
GTCTACAGAGTGAGTTCCAGGACAGCCAGGGTTACATAGAGAAATTCTTT
CTCTAAAACAAACAAAAAAGCAAACAAACAAACAAAATTATTATCCATAT
AAATACTTCAGAAATAGACTTAAGACTTTCTCCTGACAAATTATGTAAAT
AAAGCAGTGCAATTCCTCTAGAAAGCTAAAATACTATATAGGAAAGGACA
GGGGAAAGACATCATCCATAAGAAAATGCAATAGATTATGGAAGTGTACC
CTTGTAAATTGTGTATAAGAATAATAACTATCAAAAATGCCTTAGCCATA
AAGATAACTTANAGATAATAATATTGTATGCCACTACAAACACTGTATTT
CTAAATCTTGGATTAATTACTTTTTTTAGACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m03.g1 MSMg01no494_m03.g1 CHROMAT_FILE:
MSMg01no494_m03.g1 PHD_FILE: MSMg01no494_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:41 2005
         (658 letters)



>mm_chr7_68023962_68025020
          Length = 1059

 Score = 1129 bits (584), Expect = 0.0
 Identities = 646/679 (95%), Gaps = 21/679 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtaggagaaaccaagaatggggatattatttgaaatttaaatgaatgaaaggagggga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 atgtaggagaaaccaagaatggggatattatttgaaatttaaatgaatgaaaggagggaa 240

                                                                       
Query: 61  aaatgatttcactgatgattttgagaggacaaagagaagctcagtaagaccctatatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatgatttcactgatgattttgagaggacaaagagaagctcagtaagaccctatatcag 300

                                                                       
Query: 121 acacacatgacacattaaaagaagacttgaataaatttagcctatgtgtacaaaaaacta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 301 acacacatgacacattaaaagaagacttgaataaatttagcctatgtgtacataaaacta 360

                                                                       
Query: 181 caaaaataaaagtattagccttgctgggcagtgattgcacacacctttaatcctagcact 240
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 caaaaataaaattattagccttgctgggcagtgactgcacacacctttaatcctagcact 420

                                                                       
Query: 241 tgggaggcagagacaggtggatttctgagttcaaggccagtctggtctacagagtgagtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 tgggaggcagagacaggtggatttctgagttcaaggccagtctggtctacagagtgtgtt 480

                                                                       
Query: 301 ccaggacagccagggttacatagagaaattctttctctaaaacaaacaaa-aaag----- 354
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||      
Sbjct: 481 ccaggacagccagggttacatagagaaattctttctcgaaaacaaacaaacaaacaaaca 540

                                                                       
Query: 355 --------------caaacaaacaaacaaaattattatccatataaatacttcagaaata 400
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacaaacaaacaatcaaacaaacaaacaaaattattatccatataaatacttcagaaata 600

                                                                       
Query: 401 gacttaagactttctcctgacaaattatgtaaataaagcagtgcaattcctctagaaagc 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gacttaagactttctcctgacaaattatgtaaataaagcagtgcaattcctctagaaagc 660

                                                                       
Query: 461 taaaatactatataggaaaggacaggggaaagacatcatccataagaaaatgcaatagat 520
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 taaaatactatataggaaaggacaggggaaagacatcatccataagaaaatgaaatagat 720

                                                                       
Query: 521 tatggaagtgtacccttgtaaattgtgtataagaataataactatcaaaaa-tgccttag 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 721 tatggaagtgtacccttgtaaattgtgtataagaataataactatcaaaaaatgtcttag 780

                                                                       
Query: 580 ccataaagataacttanagataataatattgtatgccactacaaacactgtatttctaaa 639
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 781 ccataaagataacttaaagataataatattgtatgccactacaaacaccgtatttctaaa 840

                              
Query: 640 tcttggattaattactttt 658
           ||||| |||||||||||||
Sbjct: 841 tcttgaattaattactttt 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space:   679752
Effective search space used:   679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)