BAC Information

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BAC

Clone NameMSMg01-494M04
Chromosome7 (Build37)
Map Location 106,256,681 - 106,257,173
singlet/doubletsinglet
Overlap geneUvrag
Upstream geneMyo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, EG666529
Downstream geneDgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M04.T7 (MSMg01no494_m04.b1)MSMg01-494M04.TJ (MSMg01no494_m04.g1)
ACCAG571964AG571965
length743731
length of high quality
(start - end)
324 (58 - 381)493 (67 - 559)
definitionCHROMAT_FILE: MSMg01no494_m04.b1 PHD_FILE: MSMg01no494_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:41 2005CHROMAT_FILE: MSMg01no494_m04.g1 PHD_FILE: MSMg01no494_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTC
CTGTTCGTTTGGGAGACAGCTCAGTTGATAATGTGCAAGCAAGGGAACCT
AAATTTGAAACCCCAGTACCAATGAAAAAAGCCGGGTATGGTGGCCCATG
CTTTTAATCCCAACACAGAAGGATCCCTGGGGCTTACTAGCTGGCCAACC
TAGCTTAATTAGTTCCAAGCCAATGAAAGACTTGTGTGTCCATAAGTATG
GTTGATCGAATCTGAAGAACAATACTAGAGATTAACTTCTAGCTTCCACA
TGCGTATACGTGCACATGAACTTACACTTATACACAAACATGGGGTGAGG
GAAAGGAGGAAGAAGGGAGGGAGGGAGGGAGNGTATTTTNNNTTTTTTTT
NTTTTTTTTTTTTTTNTTTTTTTTTTNNNTTTTTNTTTTTTTTTTNTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTT
TTTTNTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTGTTTTTTTNN
GGTTGTTTTTGCGGTCGTGTCTTTTCCTTTTGTTTTTTTTGCCCTCTTCC
TGTAGAGGCGTGCTCCCTGTCCAGCGATATTCCCGCGTTCGCGAACAATG
CTCTCGCTGCGTTCTCACGTATCCCTTTTTACCAGTATTATTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCAGCAATGCAGTGAGTAGAAATGAAATAGCA
ATGGTGTGGAACCAGCCAGAAGCCCTGGCCGATCGGGTGTATATTCACAG
GACTGAAGACTACAGGCTGCAGAGAAAAGCACGCATGCGCCAGCAGACAC
CCAGGGCAGTATTTACAGCAGCAGGATGCACACTGGCTCGAACCAGAAGT
CAAACATGCTCACCAACAGGGGAAAAAATGATCACCTATTATATTCACTC
AGTAGAATACACACAAACAAATCAAACACAGCACACAGGGCCAGCTGATC
CTGACAACCAAGCCAACACACAGGCGGGCGCCAGTCACCAGGGGCTTACT
GCATTACTTCATTCACACAAAACTCAGAAACAGGGAAACTGCCCAGCAGC
ACCGTTGTGCATCCTCACACATACACACAATTCCACAACGACCCTTTCCA
GATGGAGAGATGTGGGATGCTTGGTAGCTCATTGTTTTGGTTTTGGTTTC
TTGGTGCCAGGGTCTCACCATGTAGCTGAGGCTCACAACCCTCCTGGCTA
TTTCCTCCCAAACCCTAGTATTACAGGCATGTACCCATGCCCAGCTAGAC
ACGGCCAGCTAACTGAGCAAGGCTGTTATCACCCAGAAATTAGTCCTGTA
TACAGAGGCCTGTACAAACTACTTTTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m04.g1 MSMg01no494_m04.g1 CHROMAT_FILE:
MSMg01no494_m04.g1 PHD_FILE: MSMg01no494_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:41 2005
         (493 letters)



>mm_chr7_106256481_106257373
          Length = 893

 Score =  876 bits (453), Expect = 0.0
 Identities = 483/493 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagcaatgcagtgagtagaaatgaaatagcaatggtgtggaaccagccagaagccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagcaatgcagtgagtagaaatgaaatagcaatggtgtggaaccagccagaagccct 260

                                                                       
Query: 61  ggccgatcgggtgtatattcacaggactgaagactacaggctgcagagaaaagcacgcat 120
           ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggctgatcgggtgtgtatccacaggactgaagactacaggctgcagagaaaagcatgcat 320

                                                                       
Query: 121 gcgccagcagacacccagggcagtatttacagcagcaggatgcacactggctcgaaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gcgccagcagacacccagggcagtatttacagcagcaggatgcacgctggctcgaaccag 380

                                                                       
Query: 181 aagtcaaacatgctcaccaacaggggaaaaaatgatcacctattatattcactcagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcaaacatgctcaccaacaggggaaaaaatgatcacctattatattcactcagtaga 440

                                                                       
Query: 241 atacacacaaacaaatcaaacacagcacacagggccagctgatcctgacaaccaagccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacacacaaacaaatcaaacacagcacacagggccagctgatcctgacaaccaagccaa 500

                                                                       
Query: 301 cacacaggcgggcgccagtcaccaggggcttactgcattacttcattcacacaaaactca 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacaggtgggcgccagtcaccaggggcttactgcattacttcattcacacaaaactca 560

                                                                       
Query: 361 gaaacagggaaactgcccagcagcaccgttgtgcatcctcacacatacacacaattccac 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatcagggaaactgcccagcagcaccgttgtgcatcctcacacatacacacaattccac 620

                                                                       
Query: 421 aacgaccctttccagatggagagatgtgggatgcttggtagctcattgttttggttttgg 480
           |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 621 aacgaccctttccagatggagagacgtgggatgctcggtagctcgttgttttggttttgg 680

                        
Query: 481 tttcttggtgcca 493
           |||||||||||||
Sbjct: 681 tttcttggtgcca 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)