BAC Information

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BAC

Clone NameMSMg01-494N21
Chromosome7 (Build37)
Map Location 61,299,504 - 61,299,791
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494N21.T7 (MSMg01no494_n21.b1)MSMg01-494N21.TJ (MSMg01no494_n21.g1)
ACCAG572045AG572046
length770774
length of high quality
(start - end)		306 (31 - 336)596 (59 - 654)
definitionCHROMAT_FILE: MSMg01no494_n21.b1 PHD_FILE: MSMg01no494_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:49 2005CHROMAT_FILE: MSMg01no494_n21.g1 PHD_FILE: MSMg01no494_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCAGGATTT
ACTCTGAGTCACCAAGAGTAGGACCAGTGATATAGCAGGAACGTAGCACA
TGACTATGGAACAGGGGCACATCAGTGACTTTTCTCCATCAGAGTACACG
TTTCTTATGAAATCAACTTTTGTTTTTCTGTTTGTTATTTAAGTATAATC
TATTCAAATTGATTATATCAATGTATACACCTGTGGCCCTACATGAAATG
AAAGCAAGAGCACTGAGCCACATGTTTTTTTTGTTTTGTTTTGTTTGTTT
TGTTCTCCCTTCCCTTCCCTTCCCTTCCCTTACCTTACCTTACCTTACCT
TACCTTACCTTACCTTACCTTACCTTACCTTACCTTACCTTCCCTTCCCT
TCTCTTCTCTTCTCTTCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCTTCT
CTTCTCTTCTCTTCTCCTCTCTTCTCCTCTCCTCTCCTCTCTTCTCCTCT
CCTCTCCTCTCCTCTCCTCTCTTCTCCTCTCCTCTCCTCTCTTCTCCTCC
CTTCNCCTCTCTTCTCCTCCCCTCTTCTCTTCTCCCCTCTCTTTTCTTCT
CCTTTTCTCCTTCCTCTTCTCTTTTTTTCCTTTTCTCCTTTCCCTCTTTT
TTCTTCTTCTCCCTTTNCNTCTCCCTTTCCCTTTCCTTTTTCTTTCTTCC
TTTTCCTTTCCTCTCTCTTTCCCTTTCCTCCCTTTTTCTTTCCTTCCCTC
TTTCTCTCTTTTTATCCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTTCTGTCCAAAGGAAATGCAGGGACAAAAAGTAGAGCAGTG
ACTGAAGGAAAGGCCATCCAGAGTCTGGCCAACCTGGGGATCCATCCCAC
ATGCAGACACCAAACCAAGACACTATTGCGGATGCCAAATAGGACTTGCT
GACAGGAGCCTGATACAGCTGTCTTCTGAGAGGCTCTGCCAGATCCTGAC
CAGATCCTGACAAATACAAATGCATGCAACCAGCCATCATTGGATTGAGC
ACAGGGATCCCAAAGGAGGAGTTAAGGGAAGGATTGAAGGAGCTGACAGG
GCCTTATTTGGCATCAATCGGAGGGGAGGCCCTTGGTTCTGTGAAGGCTT
GATGCTCCAGTATAGAGAAATACTAAGGTGGTGAGGCAGGAGTGGATAGG
TGGGTTGGGGAGCACCCTCATAGAAGCATGGTAAGGGTGGTTGCAGAGGG
GAAACTAGGAAAGGGGATAGCATTTCAAATGTAAATAAATAAAATATCCC
ATTAAATAAAAAGAAAAAATGAAAGTTTTTCTATTTAGAAAGGAAATTAC
CTCACAACCATGAGTTACATATTTTCTTTCTTTTTTAATCATTATTATTA
TTTCTATTAGGNATTTTCTTCATTTATATTTCCAATGCTATCCCAAAAGT
CCCCCATACCCTCCCCCTCCCACTTCCCTAACTAACCAACTTCACTTCTT
GGGCCTGGATGGCTCAACCGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_n21.b1 MSMg01no494_n21.b1 CHROMAT_FILE:
MSMg01no494_n21.b1 PHD_FILE: MSMg01no494_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:49 2005
         (306 letters)



>mm_chr7_61299300_61300005
          Length = 706

 Score =  466 bits (241), Expect = e-136
 Identities = 278/293 (94%), Gaps = 5/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaggatttactctgagtcaccaagagtaggaccagtgatatagcaggaacgt 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcctcaggatttaatctgagtcaccaagagtaggaccagtgatatagcaggaacat 264

                                                                       
Query: 65  agcacatgactatggaacaggggcacatcagtgacttttctccatcagagtacacgtttc 124
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 265 agcacatgactatggaacaggggtacatcagtgacttttctccaacagagtacacgtttc 324

                                                                       
Query: 125 ttatgaaatcaacttttgtttttctgtttgttatttaagtataatctattcaaattgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatgaaatcaacttttgtttttctgtttgttatttaagtataatctattcaaattgatt 384

                                                                       
Query: 185 atatcaatgtatacacctgtggccctacatgaaatgaaagcaagagcactgagccacatg 244
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 atatcaatgtgtacacctgtggccctacatgaaatgaaagcaagggcactgagccacatg 444

                                                                
Query: 245 ttttttttgttttgttttgtttgttttgttctcccttcccttcccttcccttc 297
           |||||||||||||||||     ||||||||||| |||| |||| |||| ||||
Sbjct: 445 ttttttttgttttgttt-----gttttgttctctcttctcttctcttctcttc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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