Query= MSMg01no494_p13.b1 MSMg01no494_p13.b1 CHROMAT_FILE:
MSMg01no494_p13.b1 PHD_FILE: MSMg01no494_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:56 2005
(224 letters)
>mm_chr7_105272379_105273002
Length = 624
Score = 426 bits (220), Expect = e-124
Identities = 223/224 (99%)
Strand = Plus / Plus
Query: 1 gagggtgaagaaggaggggtttatctaagaccaggaacatagcctagggcagtggggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggtgaagaaggaggggtttatctaagaccaggaacatagcctagggcagtggggagt 260
Query: 61 gagggcagccggacctagaagcctcttcactcagtgcaagcccagtcagggaaaagccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggcagccggacctagaagcctcttcactcagtgcaagcccagtcagggaaaagccca 320
Query: 121 tggactgatggggtgccctcttccagagcctcaggctccccataaaagcatgttaccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggactgatggggtgccctcttccagagcctcaggctccccataaaagcatgttaccact 380
Query: 181 tagaaagcttaacctgtcactactagctctagtaaacttgaact 224
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaagctcaacctgtcactactagctctagtaaacttgaact 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no494_p13.g1 MSMg01no494_p13.g1 CHROMAT_FILE:
MSMg01no494_p13.g1 PHD_FILE: MSMg01no494_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:56 2005
(670 letters)
>mm_chr7_105434795_105435864
Length = 1070
Score = 1210 bits (626), Expect = 0.0
Identities = 656/670 (97%), Gaps = 8/670 (1%)
Strand = Plus / Minus
Query: 1 agagattcatctgcttctgcctcttaagtgttgggattaaaggtatgcgtcaccttacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agagattcatctgcttctgcctcttaagtgttgggattaaaggtatgcgtcaccttacct 702
Query: 61 ggatgagatattttatataaggcaagttgtgctgggcctggagcgaataggggccaaagc 120
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 701 ggaagagatattttatataagacaagttgtgctgggcctggagcgaataggggtcaaagc 642
Query: 121 gagttggggtcggagcaagcagcaagcggggccagagcaagtgggagaaagggaaggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gagttggggtcggagcaagcagcaagcggggccagagcaagtgggagaaagggaaggggg 582
Query: 181 aaaagaaaaaaaaaaagaaaagaaaagttgcttaatttttctttagttgtctgtagctgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 -------aaaaaaaaagaaaagaaaagttgcttaatttttctttagttgtctgtagctgt 529
Query: 241 catactggattatcaattatcttactggtttagataaataatgacttccatagatgctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 catactggattatcaattatcttactggtttagataaataatgacttccatagatgctaa 469
Query: 301 agtagcatataaattttggttaatggtccacaagtttactataaatttagaatatggttt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtagcatataaatgttggttaatggtccacaagtttactataaatttagaatatggttt 409
Query: 361 tgtactctggaggcagaggcaggtagatatttgtgaagttgcagactaacccctgatcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 408 tgtactctggaggcagaggcaggtagatatttgtgaagttgcagactaaccccagatcta 349
Query: 421 cataatgagaccctgtgtaaaaaaaagtcttcactgtctttgaaattcaaattatcttcc 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cataatgagaccctgtgt-aaaaaaagtcttcactgtctttgaaattcaaattatcttcc 290
Query: 481 tttttgcttaggaactgaaagttatttattttattctaaaaaatgtctgttttactaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttttgcttaggaactgaaagttatttattttattctaaaaaatgtctgttttactaaaa 230
Query: 541 acattactcagtgcaatgcctaaaccctgtgctcataaattatagagtgaagggatgaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acattactcagtgcaatgcctaaaccctgtgctcataaattatagagtgaagggatgaag 170
Query: 601 aaagatagtctcttagcaccattatatattgtcattaaaaactaccttttaattcataaa 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 169 aaagatagtctcttagcaccattatatattgtcattaaaaactaccttttaatttataaa 110
Query: 661 tatacataga 670
||||||||||
Sbjct: 109 tatacataga 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
