BAC Information

Click to search

BAC

Clone NameMSMg01-495L20
Chromosome7 (Build37)
Map Location 4,427,729 - 4,428,359
singlet/doubletsinglet
Overlap geneEps8l1
Upstream geneCacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13
Downstream genePpp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495L20.T7 (MSMg01no495_l20.b1)MSMg01-495L20.TJ (MSMg01no495_l20.g1)
ACCAG572712AG572713
length739830
length of high quality
(start - end)		631 (79 - 709)44 (74 - 117)
definitionCHROMAT_FILE: MSMg01no495_l20.b1 PHD_FILE: MSMg01no495_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:51 2005CHROMAT_FILE: MSMg01no495_l20.g1 PHD_FILE: MSMg01no495_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGGACACCGAC
CGCGGAATTCTTGCCCTGCCTCCAACCAGCGAAGGACTGTGGCTATGGCT
CACCTGTCTGGGGTGTGACTCAGAAGTAGAGTACTTGCCTAGAATCTATT
AGTAAGGGGATGAGACATAGATCAGTGGTACAATGTCTGCCTAGCATATG
CAAGATACTGGGTTCAATCCCCGGCACCACAAAAAGGGTAGAAGAGGGAT
AATTGTGGAATCTCTGGAGGAGGAAGGAACTAAAGGTGATCCACATTTAT
GGAGCTGCCCTGTAGTTCTGGGATTTTTGAATCTGAACATGATTGGCATG
CAGTGTGGTATAAGCATATGCATTGGCTATTACTTGTACCTTGCTCATTA
TCCTAGTGGATGATCAGTATAGTAGATCTGCTGTTTCTAGCTATCTGTCC
TGAGTTCTACTATTCTCACTTATAACAATGCAAGTGTGGAGCTGGAGAGA
TGGCTCAGAGGTTAAGAACACTCTCTGCCCTTGCAGAGGACCTGGGCTCA
GTTCCTAGCACCACATGGTGGCCCACAACTGGCTGTAACTCCAGCTCTAG
GATGCCCTCTTCTAGGGCTCTGTGAGGACCACACATAGATGGTGCACATA
CATAAGTGCAGGCAAGGAGAGATGGCTCAGCGGTTAAGAGCACCAATTGC
TCTTCTGAAGGTCCTGAGTTCAAATTCCAGCAACCACAT

AAAATCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTATTCTGCGGATTCTGGTGGTGGACAAAAGAGTGGGGG
TAGGGAGGGGGGAGACATTTGGACTGAGACAGAGAGGAGAGAGATGGAGG
AAGCGGGGGGGGGGGTTGTGTGGGGAGNNNNNNNNNTNNNTNNNNNTTTT
TTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTTTTCTCNTTTTTTTTTTT
TTTCTGNTGTGTGGTGTTTTTTTTCGGGTCCCTCTCCTTTTTTTTTTCCT
TTTTTCTTTTTTTTTTTTTTCTCTTTTTCTTCTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCTTTTTTTTCCCTTTTTTTCTCTTTTTTTTTTTT
TTCTCTTTTTTCTTTTTTCTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTC
TATCTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTTTCTTTTTTCTTTTT
TTTTTCTTTTTTTTTTTTTCTTTTCTTTTTTTTCCTTTTTCTTTTTTTTT
TTTTCTTTTTCTTCTCTCTTTTTCTTTTCTCTTTTTTTCTTTTTTCTTTT
TTTCTCTTTTTTTCTCCTTTTCTTTCTCTTTTTTCCCTTTTTTCCTTCTC
TTTTTTTTTTCTTTTTTCTTCTTTTTTTTTTCTTACTTTTTTTTTTTTTT
TTTTTCTTTCTTTTTTTTTTTTTCCTTTTTTTTTTCCCCTTTTCTTTTTT
TTTTTTTTTTTTCTCTTCTTTTCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_l20.b1 MSMg01no495_l20.b1 CHROMAT_FILE:
MSMg01no495_l20.b1 PHD_FILE: MSMg01no495_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:51 2005
         (631 letters)



>mm_chr7_4427529_4428559
          Length = 1031

 Score = 1151 bits (595), Expect = 0.0
 Identities = 622/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgaaggactgtggctatggctcacctgtctggggtgtgactcagaagtagagtacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgaaggactgtggctatggctcacctgtctggggtgtgactcagaagtagagtacttgc 260

                                                                       
Query: 61  ctagaatctattagtaaggggatgagacatagatcagtggtacaatgtctgcctagcata 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctagaatctattagtaaggggatgagacatagatcagtggtgcaatgtctgcctagcata 320

                                                                       
Query: 121 tgcaagatactgggttcaatccccggcaccacaaaaagggtagaagagggataattgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaagatactgggttcaatccccggcaccacaaaaagggtagaagagggataattgtgg 380

                                                                       
Query: 181 aatctctggaggaggaaggaactaaaggtgatccacatttatggagctgccctgtagttc 240
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 381 aatctctggaggaggaaggaactaaaggcgatccacattaatggagctgccctgtagttc 440

                                                                       
Query: 241 tgggatttttgaatctgaacatgattggcatgcagtgtggtataagcatatgcattggct 300
           |||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggaggatcgaatctgaacatgattggcatgcagtgtggtataagcatatgcattggct 500

                                                                       
Query: 301 attacttgtaccttgctcattatcctagtggatgatcagtatagtagatctgctgtttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacttgtaccttgctcattatcctagtggatgatcagtatagtagatctgctgtttct 560

                                                                       
Query: 361 agctatctgtcctgagttctactattctcacttataacaatgcaagtgtggagctggaga 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 agctatctgtcctgagttctactattctcacttataacactgcaagtgtggagctggaga 620

                                                                       
Query: 421 gatggctcagaggttaagaacactctctgcccttgcagaggacctgggctcagttcctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gatggctcagaggttaagaacactctctgcccttgcagaggacctggactcagttcctag 680

                                                                       
Query: 481 caccacatggtggcccacaactggctgtaactccagctctaggatgccctcttctagggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccacatggtggcccacaactggctgtaactccagctctaggatgccctcttctagggc 740

                                                                       
Query: 541 tctgtgaggaccacacatagatggtgcacatacataagtgcaggcaaggagagatggctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgtgaggaccacacatagatggtgcacatacataagtgcaggcaaggagagatggctc 800

                                          
Query: 601 agcggttaagagcaccaattgctcttctgaa 631
           |||||||||||||||||||||||||||||||
Sbjct: 801 agcggttaagagcaccaattgctcttctgaa 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |